From aa3ee3c06f2937ac571078f9b6902407ac19103f Mon Sep 17 00:00:00 2001
From: Kathryn Iverson <kd.iverson@gmail.com>
Date: Mon, 2 Jul 2012 14:11:04 -0400
Subject: [PATCH] updated getgroupnames

---
 kruskalwalliscommand.cpp | 12 +++++++++---
 kruskalwalliscommand.h   |  1 +
 2 files changed, 10 insertions(+), 3 deletions(-)

diff --git a/kruskalwalliscommand.cpp b/kruskalwalliscommand.cpp
index 39afca8..dd5eb09 100644
--- a/kruskalwalliscommand.cpp
+++ b/kruskalwalliscommand.cpp
@@ -141,15 +141,19 @@ int KruskalWallisCommand::execute(){
         
         //math goes here
         
-        int N = lookup.size();
+        int N = m->getNumGroups();
         double H;
         double tmp = 0.0;
         vector<groupRank> vec;
+        vector<string> groups = m->getGroups();
         string group;
         int count;
         double sum;
                 
         //merge all groups into a vector
+        
+        
+        
         //rank function here
         assignRank(vec);
         
@@ -157,7 +161,7 @@ int KruskalWallisCommand::execute(){
         for (int i=0;i<N;i++) {
             count = 0;
             sum = 0;
-            //group = next group
+            group = groups[i];
             for(int j;j<vec.size();j++) {
                 if (vec[j].group == group) {
                     count++;
@@ -231,7 +235,9 @@ void KruskalWallisCommand::assignRank(vector<groupRank> &vec) {
     
 }
 //**********************************************************************************************************************
-
+void KruskalWallisCommand::assignValue(vector<groupRank> &vec) {
+    
+}
 //**********************************************************************************************************************
 //**********************************************************************************************************************
 //**********************************************************************************************************************
\ No newline at end of file
diff --git a/kruskalwalliscommand.h b/kruskalwalliscommand.h
index 0fa8b68..4a1e189 100644
--- a/kruskalwalliscommand.h
+++ b/kruskalwalliscommand.h
@@ -38,6 +38,7 @@ public:
     int execute(); 
 	void help() { m->mothurOut(getHelpString()); }
     void assignRank(vector<groupRank>&);
+    void assignValue(vector<groupRank>&);
     
     
 private:
-- 
2.39.2