From 990ded2eb38078a417fa00b4fbb4d3c24f4b5046 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Tue, 9 Aug 2011 11:51:23 +0000
Subject: [PATCH] added count.groups command and paralellized align.seqs for
 windows

---
 aligncommand.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/aligncommand.cpp b/aligncommand.cpp
index b7c6843..87ceb2c 100644
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -934,7 +934,7 @@ int AlignCommand::createProcesses(string alignFileName, string reportFileName, s
 		inFASTA.seekg(lines[processors-1]->start-1);
 		char c = inFASTA.peek();
 		
-		if (c == '>') { //we need to move back
+		if (c != '>') { //we need to move back
 			lines[processors-1]->start--; 
 		}
 		
-- 
2.39.2