From 8772a51e7ab31b1c49dada6d38baf1474444943c Mon Sep 17 00:00:00 2001
From: Kathryn Iverson <kd.iverson@gmail.com>
Date: Wed, 20 Jun 2012 17:34:14 -0400
Subject: [PATCH] edited createRabund function

---
 mgclustercommand.cpp | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index a0f33d6..e5681ef 100644
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -710,9 +710,16 @@ void MGClusterCommand::sortHclusterFiles(string unsortedDist, string unsortedOve
 //**********************************************************************************************************************
 
 RAbundVector MGClusterCommand::createRabund(ListVector list, map<string, int> nameMapCounts){
-    for(int i = 0; i < list->getNumBins(); i++) { 
-    
+    try {
+        RAbundVector rav;
+        for(int i = 0; i < list->getNumBins(); i++) {   rav.push_back(nameMapCounts[i]);    }
+        return rav;
     }
+    catch(exception& e) {
+		m->errorOut(e, "MGClusterCommand", "createRabund");
+		exit(1);
+	}
+    
 }
 
 //**********************************************************************************************************************
-- 
2.39.2