From 6d12ed0ba66fb35e9e2781fe3ca361e2293f2476 Mon Sep 17 00:00:00 2001 From: westcott Date: Fri, 21 Jan 2011 13:35:24 +0000 Subject: [PATCH] nmds command done --- nmdscommand.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nmdscommand.cpp b/nmdscommand.cpp index 4adb57c..0661f24 100644 --- a/nmdscommand.cpp +++ b/nmdscommand.cpp @@ -127,7 +127,7 @@ NMDSCommand::NMDSCommand(string option) { outputDir += m->hasPath(phylipfile); //if user entered a file with a path then preserve it } - string temp = validParameter.validFile(parameters, "mindim", false); if (temp == "not found") { temp = "1"; } + string temp = validParameter.validFile(parameters, "mindim", false); if (temp == "not found") { temp = "2"; } convert(temp, mindim); temp = validParameter.validFile(parameters, "maxiters", false); if (temp == "not found") { temp = "500"; } @@ -160,7 +160,7 @@ void NMDSCommand::help(){ m->mothurOut("The phylip parameter allows you to enter your distance file."); m->mothurOutEndLine(); m->mothurOut("The axes parameter allows you to enter a file containing a starting configuration."); m->mothurOutEndLine(); m->mothurOut("The maxdim parameter allows you to select how maximum dimensions to use. Default=2"); m->mothurOutEndLine(); - m->mothurOut("The mindim parameter allows you to select how minimum dimensions to use. Default=1"); m->mothurOutEndLine(); + m->mothurOut("The mindim parameter allows you to select how minimum dimensions to use. Default=2"); m->mothurOutEndLine(); m->mothurOut("The maxiters parameter allows you to select the maximum number of iters to try with each random configuration. Default=500"); m->mothurOutEndLine(); m->mothurOut("The iters parameter allows you to select the number of random configuration to try. Default=10"); m->mothurOutEndLine(); m->mothurOut("The epsilon parameter allows you to select set an acceptable stopping point. Default=1e-12."); m->mothurOutEndLine(); -- 2.39.2