From 3914e7db89b35c97e4075271d4849567d6cca5f7 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Mon, 2 May 2011 16:31:36 +0000
Subject: [PATCH] modified chimera.slayer bootstrap to bump up to 1000 on
 borderline bootstrap values

---
 slayer.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/slayer.cpp b/slayer.cpp
index c4e199f..88f9c1c 100644
--- a/slayer.cpp
+++ b/slayer.cpp
@@ -66,7 +66,7 @@ string Slayer::getResults(Sequence* query, vector<Sequence*> refSeqs) {
 						
 						
 						//are we within 10 points of the bootstrap cutoff?
-						if (divs[k].bsMax >= (minBS-10)) {
+						if ((divs[k].bsMax >= (minBS-10)) && (iters < 1000)) {
 							snpsLeft = getSNPS(divs[k].parentA.getAligned(), divs[k].querySeq.getAligned(), divs[k].parentB.getAligned(), divs[k].winLStart, divs[k].winLEnd);
 							snpsRight = getSNPS(divs[k].parentA.getAligned(), divs[k].querySeq.getAligned(), divs[k].parentB.getAligned(), divs[k].winRStart, divs[k].winREnd);
 							
-- 
2.39.2