From 2b5b02aad9df41a316d464ad335e9f6632e82175 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 2 Aug 2013 08:43:17 -0400 Subject: [PATCH] Qualscore gobbles --- qualityscores.cpp | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/qualityscores.cpp b/qualityscores.cpp index 2649224..0408b83 100644 --- a/qualityscores.cpp +++ b/qualityscores.cpp @@ -32,22 +32,22 @@ QualityScores::QualityScores(ifstream& qFile){ m = MothurOut::getInstance(); int score; - seqName = getSequenceName(qFile); + seqName = getSequenceName(qFile); m->gobble(qFile); if (m->debug) { m->mothurOut("[DEBUG]: name = '" + seqName + "'\n."); } if (!m->control_pressed) { - string qScoreString = m->getline(qFile); + string qScoreString = m->getline(qFile); m->gobble(qFile); if (m->debug) { m->mothurOut("[DEBUG]: scores = '" + qScoreString + "'\n."); } while(qFile.peek() != '>' && qFile.peek() != EOF){ if (m->control_pressed) { break; } - string temp = m->getline(qFile); + string temp = m->getline(qFile); m->gobble(qFile); if (m->debug) { m->mothurOut("[DEBUG]: scores = '" + temp + "'\n."); } qScoreString += ' ' + temp; } - //cout << "done reading " << endl; + //cout << "done reading " << endl; istringstream qScoreStringStream(qScoreString); int count = 0; while(!qScoreStringStream.eof()){ @@ -68,7 +68,7 @@ QualityScores::QualityScores(ifstream& qFile){ } seqLength = qScores.size(); - //cout << "seqlength = " << seqLength << '\t' << count << endl; + //cout << "seqlength = " << seqLength << endl; } catch(exception& e) { -- 2.39.2