| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2011-06-01 |
westcott | added headers to shared and relabund files |
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| 2011-04-08 |
westcott | fixing bugs while testing |
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| 2010-10-25 |
westcott | testing 1.14.0 |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-01 |
westcott | working on unifrac parallelization |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-07-28 |
westcott | some bug fixes |
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| 2010-07-19 |
westcott | added compile time default path |
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| 2010-05-20 |
westcott | added cluster.split command |
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| 2010-05-14 |
westcott | 1.10.0 |
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| 2010-04-14 |
westcott | some changes while testing 1.9 |
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| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-02-04 |
pschloss | pat's ../ bug fix |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
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| 2009-06-08 |
pschloss | added some features to trim.seqs |
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| 2009-06-08 |
westcott | dist.seqs can now use n processors, and only outputs... |
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| 2009-06-07 |
pschloss | modified trim.seqs command |
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| 2009-06-06 |
pschloss | added trim.seqs command |
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| 2009-06-06 |
pschloss | added reverse.seqs command |
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| 2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
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| 2009-06-04 |
westcott | fixed some bugs |
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| 2009-06-04 |
pschloss | pat's edits of screen.seqs and summary.seqs |
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| 2009-06-03 |
pschloss | added screen.seqs command - pds |
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| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
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| 2009-06-03 |
pschloss | addition of summary.seq command [pds] |
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| 2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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| 2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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| 2009-05-22 |
westcott | changed defaults in allign.seqs command |
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| 2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
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| 2009-05-21 |
westcott | added dist.shared command |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
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| 2009-05-18 |
westcott | added boneh, efron, and solow calculators |
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| 2009-05-18 |
westcott | added alignment code |
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| 2009-05-13 |
westcott | changed name of distance command to dist.seqs |
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| 2009-05-12 |
westcott | added distance command and filterseqs |
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| 2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
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| 2009-05-04 |
ryabin | *** empty log message *** |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
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| 2009-04-14 |
pschloss | *** empty log message *** |
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| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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| 2009-04-08 |
westcott | fixed bug in read.tree updates help and validparameters... |
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| 2009-04-06 |
westcott | added get.oturep command |
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| 2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added... |
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| 2009-04-03 |
westcott | venn command with up to 4 groups using sharedsobs,... |
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| 2009-04-02 |
westcott | venn command with up to 4 groups |
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| 2009-03-31 |
westcott | started venn command |
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| 2009-03-30 |
ryabin | Fixed validParameter() method so line parameter can... |
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| 2009-03-30 |
westcott | made sorting optional but sort by default, in case... |
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| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
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| 2009-03-27 |
westcott | added heatmap command |
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| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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| 2009-03-25 |
westcott | started heatmap command |
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| 2009-03-20 |
westcott | documentation |
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| 2009-03-19 |
westcott | updated errorchecking so it checks if the parameter... |
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| 2009-03-18 |
westcott | working on libshuff |
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| 2009-03-09 |
westcott | fixed valid parameters to include shared parameter... |
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| 2009-02-20 |
westcott | fixed unweighted calculator |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
westcott | minor bugs fixes and added line and label options to... |
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| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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| 2009-02-11 |
westcott | added errorchecking and help info on new unifrac and... |
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| 2009-02-11 |
westcott | adding treeclimber and unifrac pieces |
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| 2009-01-30 |
pschloss | When Pat tried to compile mothur in Ubuntu linux, there... |
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| 2009-01-28 |
westcott | fixed parameter issues |
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| 2009-01-28 |
pschloss | I've changed the listfile, sabundfile, etc. option... |
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| 2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1. |
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| 2009-01-21 |
westcott | deconvolute command |
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| 2009-01-20 |
westcott | changed read.shared to read.list and incorporated the... |
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| 2009-01-16 |
westcott | Initial revision |
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projects / mothur.git / history