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[mothur.git] / unifracunweightedcommand.cpp

2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	blob \| commitdiff \| raw
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	blob \| commitdiff \| raw \| diff to current
2013-01-18	Sarah Westcott	fixed seq. error align=f issue. added std and ave calcs...	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-06-26	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added phylip as output file type for commands that...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	fixed segfault in unifrac with subsample. in progress...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-16	Sarah Westcott	added subsample and consensus parameters to unifrac...	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-10-18	westcott	1.22.0	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-07-29	westcott	removed UWSig and WSig from output if user does not...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-07	westcott	fixed bug with tree reading	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	changes while setting up test files	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	added getCommandInfoCommand for gui	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-02-25	westcott	added root parameter to the unifrac commands so you...	blob \| commitdiff \| raw \| diff to current
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	blob \| commitdiff \| raw \| diff to current
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	blob \| commitdiff \| raw \| diff to current
2011-02-18	westcott	fixed unifrac bug with multiple processors if numComps...	blob \| commitdiff \| raw \| diff to current
2011-02-18	pschloss	mods to amova command	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2011-01-07	westcott	working on chimera change to add trim feature, fixed...	blob \| commitdiff \| raw \| diff to current
2010-11-12	westcott	added get.otus and remove.otus commands	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	fixes while testing	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-10-04	westcott	paralellized rarefaction.single	blob \| commitdiff \| raw \| diff to current
2010-09-01	westcott	unifrac parallelization done, changed dist.seqs output...	blob \| commitdiff \| raw \| diff to current
2010-08-31	westcott	working on parallelizing unifrac.unweighted.	blob \| commitdiff \| raw \| diff to current
2010-08-30	westcott	sped up unifrac unweighted.	blob \| commitdiff \| raw \| diff to current
2010-08-30	westcott	sped up unifrac weighted.	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-04-16	westcott	1.9	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-01-26	westcott	added set.dir command and modified commands to redirect...	blob \| commitdiff \| raw \| diff to current
2010-01-12	westcott	worked on hcluster. made .single command run using...	blob \| commitdiff \| raw \| diff to current
2010-01-05	westcott	you can now use a distance matrix as input for the...	blob \| commitdiff \| raw \| diff to current
2010-01-04	westcott	added pca command	blob \| commitdiff \| raw \| diff to current
2009-08-06	westcott	This is 1.5.	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	blob \| commitdiff \| raw \| diff to current
2009-06-12	westcott	broke up globaldata and moved error checking and help...	blob \| commitdiff \| raw \| diff to current
2009-04-21	westcott	fixed bug with parsimony(groups=all) and unifrac.unweig...	blob \| commitdiff \| raw \| diff to current
2009-04-17	westcott	added bootstrap.shared command and fixed some bugs...	blob \| commitdiff \| raw \| diff to current
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	blob \| commitdiff \| raw \| diff to current
2009-04-08	westcott	fixed bug in read.tree updates help and validparameters...	blob \| commitdiff \| raw \| diff to current
2009-04-06	westcott	fixed memory leak in parsimony calculator and added...	blob \| commitdiff \| raw \| diff to current
2009-03-16	westcott	added nseqs and sharednseqs calculators, removed excess...	blob \| commitdiff \| raw \| diff to current
2009-03-09	westcott	fixed bug in read.tree	blob \| commitdiff \| raw \| diff to current
2009-03-09	westcott	fixed outputs in unifrac to look the same	blob \| commitdiff \| raw \| diff to current
2009-03-09	westcott	fixed valid parameters to include shared parameter...	blob \| commitdiff \| raw \| diff to current
2009-03-07	pschloss	mucked around some with the output in the unifrac.weigh...	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	fixed bug wit unifrac files	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	changed format of output in unifrac and parsimony files	blob \| commitdiff \| raw \| diff to current
2009-03-05	westcott	working on readtree	blob \| commitdiff \| raw \| diff to current
2009-03-03	westcott	parsimony output changed	blob \| commitdiff \| raw \| diff to current
2009-03-03	westcott	unifrac.unweighted command changes	blob \| commitdiff \| raw \| diff to current
2009-03-02	westcott	worked on unifrac.unweighted()	blob \| commitdiff \| raw \| diff to current
2009-02-27	westcott	fixed parsimony with groups and worked on unifrac.unwei...	blob \| commitdiff \| raw \| diff to current
2009-02-26	westcott	weightedcommand	blob \| commitdiff \| raw \| diff to current
2009-02-20	westcott	fixed unweighted calculator	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	parsimony command now uses groups, fixed bug with unwei...	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	changed unweighted and weighted score cumulatives to...	blob \| commitdiff \| raw \| diff to current
2009-02-11	westcott	added errorchecking and help info on new unifrac and...	blob \| commitdiff \| raw \| diff to current
2009-02-11	westcott	adding treeclimber and unifrac pieces	blob \| commitdiff \| raw \| diff to current

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