git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - trimflowscommand.cpp

2013-04-01	SarahsWork	added end of file character to some type type reads...	blob \| commitdiff \| raw
2013-03-25	SarahsWork	removed make count from make.contigs	blob \| commitdiff \| raw \| diff to current
2013-03-12	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-03-08	SarahsWork	added N code to flow data. removed changed for trimming...	blob \| commitdiff \| raw \| diff to current
2013-03-05	SarahsWork	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-03-05	SarahsWork	working on chimera.uchime change for dereplicate=t...	blob \| commitdiff \| raw \| diff to current
2013-03-02	Pat Schloss	Added flow=I to trim.flows	blob \| commitdiff \| raw \| diff to current
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-12	Sarah Westcott	added order=A or order=B to trim.flows and shhh.flows...	blob \| commitdiff \| raw \| diff to current
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-01-16	Sarah Westcott	added topdown parameter to pre.cluster. added more...	blob \| commitdiff \| raw \| diff to current
2013-01-03	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-12-21	Sarah Westcott	added ignore option to oligos files for make.contigs...	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-10-02	Sarah Westcott	added classify.shared command and random forest files...	blob \| commitdiff \| raw \| diff to current
2012-08-24	Sarah Westcott	added sff.multiple command. fixed issue with windows...	blob \| commitdiff \| raw \| diff to current
2012-08-06	Sarah Westcott	changes while testing 1.27	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-04-10	Pat Schloss	fixed shhh.flows outputdir bug	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Pat's testing	blob \| commitdiff \| raw \| diff to current
2012-04-02	Sarah Westcott	added create.database command. fixed help in get.shared...	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	initialized numLinkers and numSpacers in trim.seqs...	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-02-24	Sarah Westcott	added linker and spacer to trim.flows	blob \| commitdiff \| raw \| diff to current
2012-02-24	Sarah Westcott	paralellized trim.seqs for windows. fixed bug in trim...	blob \| commitdiff \| raw \| diff to current
2012-02-06	Sarah Westcott	added flow file to sort.seqs. added setName and setScor...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	added qvalues to metastats. fixed bug with chimera...	blob \| commitdiff \| raw \| diff to current
2011-11-14	westcott	finished shhh.seqs command, fixed bug with remove.group...	blob \| commitdiff \| raw \| diff to current
2011-11-11	westcott	fixed bug with trim.flows that was adding flow files...	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-06-09	pschloss	trim.flows mod	blob \| commitdiff \| raw \| diff to current
2011-06-09	pschloss	some of pat's small modifications	blob \| commitdiff \| raw \| diff to current
2011-05-18	pschloss	mods to shhh.seqs and trim.flows to fix eye candy output	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-26	westcott	added current as option is lists of file names, process...	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	added getCommandInfoCommand for gui	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-03-11	pschloss	some more mods to shh.seqs	blob \| commitdiff \| raw \| diff to current
2011-03-11	pschloss	some changes to trim.flows	blob \| commitdiff \| raw \| diff to current
2011-02-11	pschloss	shhh.seqs and trim.flows modifications.	blob \| commitdiff \| raw \| diff to current
2011-02-08	pschloss	changes to trim.flows command	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2011-01-05	westcott	removed various build warnings	blob \| commitdiff \| raw \| diff to current
2011-01-04	westcott	Changed back to xcode build.	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-23	pschloss	addition of trim.flows	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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