| 2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter... |
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| 2013-05-23 |
Abu Zaher Md. Faridee | Merge branch 'master' into dev-ml |
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| 2013-05-13 |
Sarah Westcott | added sparcc command. fixed bug in remove.groups that... |
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| 2013-04-22 |
SarahsWork | added flag to count table read so that commands that... |
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| 2013-02-18 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-02-12 |
Sarah Westcott | added order=A or order=B to trim.flows and shhh.flows... |
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| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed... |
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| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux... |
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| 2012-12-21 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-12-17 |
Sarah Westcott | fixed issue in tree.shared when shared file was not... |
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| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename... |
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| 2012-10-30 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-10-30 |
Sarah Westcott | classify.seqs allows sequences to be in taxonomy file... |
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| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
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| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster... |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-01 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-01 |
Sarah Westcott | bug in dist.shared and tree.shared with new subsampling... |
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| 2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-30 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-30 |
Sarah Westcott | changes while testing |
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| 2012-04-13 |
Sarah Westcott | added tree reader class to handle reading trees. Rewor... |
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| 2012-04-11 |
Sarah Westcott | added subsample and consensus parameters to unifrac... |
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| 2012-04-10 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-05 |
Sarah Westcott | added subsample, tiers and processors to tree.shared... |
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| 2012-01-04 |
westcott | 1.23.0 |
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| 2011-08-22 |
westcott | added multiple processors option for Windows users... |
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| 2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-05-27 |
westcott | added deunique.tree command |
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| 2011-05-11 |
westcott | working on citations |
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| 2011-05-10 |
westcott | added citation function to commands |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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| 2011-01-24 |
westcott | remove.rare command |
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| 2011-01-21 |
westcott | added calcs to tree.shared. working on remove.rare... |
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| 2011-01-14 |
westcott | fixed trim.seqs bug with qtrim parameter and added... |
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| 2010-10-26 |
westcott | fixes while testing |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-04 |
westcott | working on testing for 1.13 |
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| 2010-09-03 |
westcott | working on testing |
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| 2010-08-27 |
westcott | fixed phylo.diversity |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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| 2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
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| 2009-09-22 |
westcott | removed line option |
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| 2009-09-15 |
westcott | fixed some issues while testing 1.6 |
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| 2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
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| 2009-06-29 |
westcott | fixed bug in bootstrap command that was caused by globa... |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-23 |
westcott | changed how we do "smart" distancing |
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| 2009-06-21 |
pschloss | This is v.1.4.0 |
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| 2009-06-18 |
westcott | fixed some bugs |
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| 2009-06-16 |
westcott | fixed some bugs and added scriptengine |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
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| 2009-06-02 |
westcott | added smart distance feature and optimized all commands... |
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| 2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-13 |
westcott | changed all shared commands so that they read the share... |
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| 2009-05-13 |
westcott | fixed bug with getting sharedrabunds for venn, heatmap... |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-04-24 |
pschloss | This is mothur v 1.2.0 - the April ~24, 2009 release |
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| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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| 2009-04-21 |
westcott | broke apart read matrix file |
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| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
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| 2009-04-14 |
westcott | removed "shared" from some of the calculator names... |
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| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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projects / mothur.git / history