git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - tree.cpp

2013-04-03	SarahsWork	added name, group and count files to chop.seqs. added...	blob \| commitdiff \| raw
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	fixed segfault in unifrac with subsample. in progress...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-23	Sarah Westcott	bugs found while testing	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-04-11	Sarah Westcott	added subsample and consensus parameters to unifrac...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-05-27	westcott	added deunique.tree command	blob \| commitdiff \| raw \| diff to current
2011-05-26	westcott	v 19.3	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	blob \| commitdiff \| raw \| diff to current
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	added design parameter to the indicator command	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	modified trim.seqs to speed up the append with multiple...	blob \| commitdiff \| raw \| diff to current
2010-12-03	westcott	fixed indicator command bug	blob \| commitdiff \| raw \| diff to current
2010-11-19	westcott	added indicator command	blob \| commitdiff \| raw \| diff to current
2010-08-30	westcott	sped up unifrac weighted.	blob \| commitdiff \| raw \| diff to current
2010-08-27	westcott	made read.tree not require a groupfile, if one is not...	blob \| commitdiff \| raw \| diff to current
2010-08-27	westcott	fixed phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-08-26	pschloss	changes to read.tree	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-06-14	westcott	fixed read.tree so that it can read trees generated...	blob \| commitdiff \| raw \| diff to current
2010-06-09	westcott	changes to blastdb to make filenames given to blast...	blob \| commitdiff \| raw \| diff to current
2010-06-04	westcott	sped up splitting of distance file by 2.5 times by...	blob \| commitdiff \| raw \| diff to current
2010-06-03	westcott	fixed cluster.split command	blob \| commitdiff \| raw \| diff to current
2010-05-04	westcott	added phylo.diversity command. added hard parameter...	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-02-12	westcott	working on chimeras	blob \| commitdiff \| raw \| diff to current
2010-02-03	westcott	added name option to read.tree for use in unifrac and...	blob \| commitdiff \| raw \| diff to current
2009-08-06	westcott	This is 1.5.	blob \| commitdiff \| raw \| diff to current
2009-08-05	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-08-01	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-18	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-16	westcott	fixed some bugs and added scriptengine	blob \| commitdiff \| raw \| diff to current
2009-06-12	westcott	broke up globaldata and moved error checking and help...	blob \| commitdiff \| raw \| diff to current
2009-05-27	westcott	fixed multiple bugs for 1.4 release	blob \| commitdiff \| raw \| diff to current
2009-05-07	westcott	fixed concensus command and modified tree class so...	blob \| commitdiff \| raw \| diff to current
2009-04-17	westcott	added bootstrap.shared command and fixed some bugs...	blob \| commitdiff \| raw \| diff to current
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	blob \| commitdiff \| raw \| diff to current
2009-04-08	westcott	fixed bug in read.tree updates help and validparameters...	blob \| commitdiff \| raw \| diff to current
2009-04-06	westcott	fixed memory leak in parsimony calculator and added...	blob \| commitdiff \| raw \| diff to current
2009-03-06	pschloss	fixed parsimony bug	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	fixed bug in read tree	blob \| commitdiff \| raw \| diff to current
2009-03-05	westcott	working on readtree	blob \| commitdiff \| raw \| diff to current
2009-03-02	westcott	worked on unifrac.unweighted()	blob \| commitdiff \| raw \| diff to current
2009-02-26	westcott	parsimony with groups	blob \| commitdiff \| raw \| diff to current
2009-02-26	pschloss	fix weighted unifrac bug in findIndex and randomize...	blob \| commitdiff \| raw \| diff to current
2009-02-26	westcott	weightedcommand	blob \| commitdiff \| raw \| diff to current
2009-02-24	pschloss	print tree debugger	blob \| commitdiff \| raw \| diff to current
2009-02-23	westcott	fixed parsimony for groups	blob \| commitdiff \| raw \| diff to current
2009-02-20	westcott	fixed unweighted calculator	blob \| commitdiff \| raw \| diff to current
2009-02-11	westcott	adding treeclimber and unifrac pieces	blob \| commitdiff \| raw \| diff to current
2009-01-26	westcott	fixed summary.shared bug and set jumble default to 1.	blob \| commitdiff \| raw \| diff to current
2009-01-23	westcott	fixed bug in sharedcommand and parselistcommand and...	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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