| 2013-05-06 |
Sarah Westcott | paralellized parsimony, unifrac.unweighted, phylo.diver... |
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| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed... |
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| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux... |
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| 2012-12-21 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-12-21 |
Sarah Westcott | working on make.contigs. fixed trim.seqs filename issue |
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| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename... |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-07-11 |
Kathryn Iverson | merged mgcluster. kw files added, but not working in... |
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| 2012-07-10 |
Sarah Westcott | changes while testing 1.26 |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-06-11 |
Sarah Westcott | fixed bug with dist.shared subsampling. added mode... |
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| 2012-06-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-06-04 |
Sarah Westcott | added check to make sure shhh.flows child processes... |
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| 2012-05-31 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-24 |
Sarah Westcott | forced rarefaction.single to output ending line for... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-03-13 |
Sarah Westcott | added unix to ifdefs. minor changes while testing 1... |
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| 2012-02-28 |
Sarah Westcott | fixed bug in windows summary.seqs and summary.qual... |
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| 2012-01-04 |
westcott | 1.23.0 |
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| 2011-08-22 |
westcott | added multiple processors option for Windows users... |
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| 2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-05-27 |
westcott | added deunique.tree command |
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| 2011-05-24 |
westcott | paralellized seq.error and dist.shared added some error... |
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| 2011-05-16 |
westcott | added chimera.uchime |
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| 2011-05-11 |
westcott | working on citations |
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| 2011-05-10 |
westcott | added citation function to commands |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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| 2011-02-08 |
westcott | added amova command |
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| 2011-01-05 |
westcott | removed various build warnings |
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| 2010-12-17 |
westcott | added odum, canberra, structchi2, structchord, structe... |
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| 2010-12-17 |
westcott | fixed bug with trim.seqs- when a file is blank for... |
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| 2010-11-05 |
westcott | cluster.split fix |
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| 2010-10-27 |
westcott | fixing helps |
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| 2010-10-26 |
westcott | fixes while testing |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-28 |
westcott | added distance option to summary.shared |
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| 2010-09-23 |
westcott | fixed order of unifrac commands so that it matches... |
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| 2010-09-15 |
westcott | paralellized summary.shared |
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| 2010-09-03 |
westcott | working on testing |
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| 2010-08-31 |
westcott | working on parallelizing unifrac.unweighted. |
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| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled share... |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2010-01-19 |
westcott | added out.hierarchy command |
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| 2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
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| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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| 2009-09-22 |
westcott | removed line option |
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| 2009-09-15 |
westcott | fixed some issues while testing 1.6 |
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| 2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-23 |
westcott | changed how we do "smart" distancing |
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| 2009-06-21 |
pschloss | This is v.1.4.0 |
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| 2009-06-18 |
westcott | fixed some bugs |
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| 2009-06-15 |
westcott | fixing minor bugs |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-05 |
westcott | line and label no longer persist between commands.... |
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| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
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| 2009-06-02 |
westcott | added smart distance feature and optimized all commands... |
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| 2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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| 2009-05-18 |
westcott | added boneh, efron, and solow calculators |
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| 2009-05-13 |
westcott | changed all shared commands so that they read the share... |
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| 2009-05-04 |
ryabin | *** empty log message *** |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-04-24 |
pschloss | This is mothur v 1.2.0 - the April ~24, 2009 release |
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| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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| 2009-04-21 |
westcott | broke apart read matrix file |
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| 2009-04-14 |
westcott | removed "shared" from some of the calculator names... |
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| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
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| 2009-03-27 |
westcott | added heatmap command |
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| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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| 2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulcz... |
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| 2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators |
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| 2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess... |
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| 2009-03-09 |
westcott | fixed bug in summary.shared for groups |
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| 2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
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| 2009-03-09 |
westcott | added ability for user to select which groups to analyz... |
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| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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| 2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(... |
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| 2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1. |
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| 2009-01-22 |
westcott | finishing the container classes, combining read.otu... |
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| 2009-01-16 |
westcott | Initial revision |
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projects / mothur.git / history