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]> git.donarmstrong.com Git - mothur.git/history - shhhercommand.cpp

2013-10-08	Sarah Westcott	added otulabels to heatmap.bin. made OTUlabels “smarter...	blob \| commitdiff \| raw
2013-09-18	Sarah Westcott	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-09-18	Sarah Westcott	added lefse command. added check for hard filter length...	blob \| commitdiff \| raw \| diff to current
2013-09-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-08-14	Sarah Westcott	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-08-14	Sarah Westcott	changed name of get.metacommunity to get.communitytype...	blob \| commitdiff \| raw \| diff to current
2013-07-19	Pat Schloss	Update mgcluster to use dist=1 for missing distances...	blob \| commitdiff \| raw \| diff to current
2013-07-18	Sarah Westcott	added adjust parameter to mgcluster. fixed bug in class...	blob \| commitdiff \| raw \| diff to current
2013-05-23	Abu Zaher Md. Faridee	Merge branch 'master' into dev-ml	blob \| commitdiff \| raw \| diff to current
2013-05-15	Sarah Westcott	added make.lookup command.	blob \| commitdiff \| raw \| diff to current
2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	blob \| commitdiff \| raw \| diff to current
2013-03-02	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-27	SarahsWork	mods to resolve some misc warnings. added alignPrimer...	blob \| commitdiff \| raw \| diff to current
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-12	Sarah Westcott	added order=A or order=B to trim.flows and shhh.flows...	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	blob \| commitdiff \| raw \| diff to current
2012-08-24	Sarah Westcott	added sff.multiple command. fixed issue with windows...	blob \| commitdiff \| raw \| diff to current
2012-08-06	Sarah Westcott	changes while testing 1.27	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Sarah Westcott	changes while testing 1.26	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-06-11	Sarah Westcott	fixed bug with dist.shared subsampling. added mode...	blob \| commitdiff \| raw \| diff to current
2012-06-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-06-04	Sarah Westcott	added check to make sure shhh.flows child processes...	blob \| commitdiff \| raw \| diff to current
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-24	Sarah Westcott	fixed bug in sffinfo when ~ was used in the sff filenam...	blob \| commitdiff \| raw \| diff to current
2012-05-23	Sarah Westcott	added design and sets parameters to the rarefaction...	blob \| commitdiff \| raw \| diff to current
2012-05-22	Sarah Westcott	added debug output classify.seqs. worked on make.contig...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Sarah Westcott	fixed bug in make.biom that occurred if some taxonomies...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	blob \| commitdiff \| raw \| diff to current
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-01	Pat Schloss	fix rarefaction.single	blob \| commitdiff \| raw \| diff to current
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	blob \| commitdiff \| raw \| diff to current
2012-04-10	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-10	Pat Schloss	fixing outputdir bug in shhhercommand.cpp	blob \| commitdiff \| raw \| diff to current
2012-04-10	Pat Schloss	dunno	blob \| commitdiff \| raw \| diff to current
2012-04-10	Pat Schloss	fixed shhh.flows outputdir bug	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Pat's testing	blob \| commitdiff \| raw \| diff to current
2012-03-28	Sarah Westcott	minor changes to pcr.seqs. Added filterToPos and filte...	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	fixed makefile	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-09	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	pschloss	* empty log message *	blob \| commitdiff \| raw \| diff to current
2011-10-07	westcott	testing 1.22.0	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	pschloss	small change to shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-06-09	pschloss	some of pat's small modifications	blob \| commitdiff \| raw \| diff to current
2011-05-20	westcott	added path search for lookup file in shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-05-18	pschloss	mods to shhh.seqs and trim.flows to fix eye candy output	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-21	pschloss	random chagnes from pat	blob \| commitdiff \| raw \| diff to current
2011-03-11	pschloss	some more mods to shh.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	fixed an mpi bug in shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	took cout's from shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	fixed bugg in shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	mods to shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2011-02-14	westcott	added make.fastq command	blob \| commitdiff \| raw \| diff to current
2011-02-14	pschloss	* empty log message *	blob \| commitdiff \| raw \| diff to current
2011-02-11	pschloss	shhh.seqs and trim.flows modifications.	blob \| commitdiff \| raw \| diff to current
2011-02-09	pschloss	mods to shhhercommand and seqerrorcommand	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2011-01-21	westcott	modified shhhercommand to make buildable with windows	blob \| commitdiff \| raw \| diff to current
2011-01-21	westcott	added calcs to tree.shared. working on remove.rare...	blob \| commitdiff \| raw \| diff to current
2011-01-05	westcott	removed various build warnings	blob \| commitdiff \| raw \| diff to current
2011-01-04	pschloss	modifications to shhh.seqs	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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