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]> git.donarmstrong.com Git - mothur.git/history - sharedcommand.cpp

2013-04-22	SarahsWork	added flag to count table read so that commands that...	blob \| commitdiff \| raw
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-10-02	Sarah Westcott	added classify.shared command and random forest files...	blob \| commitdiff \| raw \| diff to current
2012-09-11	Sarah Westcott	added count file to get.groups and remove.groups. added...	blob \| commitdiff \| raw \| diff to current
2012-08-06	Sarah Westcott	changes while testing 1.27	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-06-28	Sarah Westcott	added countable class to read and store count file...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-20	Sarah Westcott	added uchime_src folder. added biom parameter to make...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-07-18	westcott	changed normalize.shared and sub.sample commands to...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-06-01	westcott	added headers to shared and relabund files	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-25	westcott	minor bug in chimera maligner	blob \| commitdiff \| raw \| diff to current
2011-04-11	westcott	1.18.0 - fixed make.shared abort issue	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	changes while setting up test files	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	fixes while testing	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-08-27	westcott	fixed phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added ordergroup parameter to read.otu	blob \| commitdiff \| raw \| diff to current
2010-06-22	westcott	finished get.relabund command	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-02-24	westcott	finished chimera changes	blob \| commitdiff \| raw \| diff to current
2010-01-28	westcott	fixed some bugs found while testing 1.8	blob \| commitdiff \| raw \| diff to current
2010-01-26	westcott	added set.dir command and modified commands to redirect...	blob \| commitdiff \| raw \| diff to current
2010-01-19	westcott	added warning about average neighbor merges around...	blob \| commitdiff \| raw \| diff to current
2009-12-08	westcott	added list parameter to get.seqs and remove.seqs and...	blob \| commitdiff \| raw \| diff to current
2009-11-02	westcott	added groups option to read.otu, added qtrim option...	blob \| commitdiff \| raw \| diff to current
2009-10-29	westcott	added hcluster command and fixed some bugs, namely...	blob \| commitdiff \| raw \| diff to current
2009-09-29	westcott	working on chimeraslayer and found bug in shared command.	blob \| commitdiff \| raw \| diff to current
2009-09-28	westcott	started adding chimeraslayer method and fixed minor...	blob \| commitdiff \| raw \| diff to current
2009-09-22	westcott	removed line option	blob \| commitdiff \| raw \| diff to current
2009-09-18	westcott	adding more error checking for list and group files...	blob \| commitdiff \| raw \| diff to current
2009-09-17	westcott	added check for blank files in openInputFile, add check...	blob \| commitdiff \| raw \| diff to current
2009-09-15	westcott	fixed some issues while testing 1.6	blob \| commitdiff \| raw \| diff to current
2009-08-05	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-08-01	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-06-29	westcott	modified read.otu and shared command	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-23	westcott	changed how we do "smart" distancing	blob \| commitdiff \| raw \| diff to current
2009-06-22	westcott	worked on parselist and shared commands, removing memor...	blob \| commitdiff \| raw \| diff to current
2009-06-19	westcott	version working on mac with .tellg changed to unget...	blob \| commitdiff \| raw \| diff to current
2009-06-15	westcott	fixing minor bugs	blob \| commitdiff \| raw \| diff to current
2009-06-03	westcott	added get.rabund and get.sabund command and fixed bug...	blob \| commitdiff \| raw \| diff to current
2009-06-02	westcott	added smart distance feature and optimized all commands...	blob \| commitdiff \| raw \| diff to current
2009-04-21	westcott	broke apart read matrix file	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	minor bugs fixes and added line and label options to...	blob \| commitdiff \| raw \| diff to current
2009-01-23	westcott	fixed bug in sharedcommand and parselistcommand and...	blob \| commitdiff \| raw \| diff to current
2009-01-16	westcott	Initial revision	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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