git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - sequence.cpp

2013-04-01	SarahsWork	added end of file character to some type type reads...	blob \| commitdiff \| raw
2013-03-18	SarahsWork	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-03-13	Pat Schloss	Fixed a bug in the count output of seq.error when using...	blob \| commitdiff \| raw \| diff to current
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	blob \| commitdiff \| raw \| diff to current
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	added sets to amova and homova commands. added oligos...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-22	Sarah Westcott	added debug output classify.seqs. worked on make.contig...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-02	Sarah Westcott	added create.database command. fixed help in get.shared...	blob \| commitdiff \| raw \| diff to current
2012-03-28	Sarah Westcott	added keep dots to pcr.seqs. fixed pre.cluster name...	blob \| commitdiff \| raw \| diff to current
2012-03-28	Sarah Westcott	minor changes to pcr.seqs. Added filterToPos and filte...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2011-11-14	westcott	finished shhh.seqs command, fixed bug with remove.group...	blob \| commitdiff \| raw \| diff to current
2011-04-20	pschloss	some alterations to chimera.slayer	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	mods to seq.errror	blob \| commitdiff \| raw \| diff to current
2011-01-03	westcott	added template=self capability to chimers.slayer, worke...	blob \| commitdiff \| raw \| diff to current
2010-12-20	pschloss	pat's changes to seq.error command	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	bug fixes	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-07-19	pschloss	pat's updates on 7/19/10	blob \| commitdiff \| raw \| diff to current
2010-06-15	westcott	changed how we count sequences in a fastafile to allow...	blob \| commitdiff \| raw \| diff to current
2010-06-15	westcott	final commit before testing 1.11	blob \| commitdiff \| raw \| diff to current
2010-05-10	westcott	fixed problem with class.fy.seqs where group totals...	blob \| commitdiff \| raw \| diff to current
2010-04-17	westcott	1.9	blob \| commitdiff \| raw \| diff to current
2010-04-07	westcott	added MPI code, broke up chimera.seqs into 5 separated...	blob \| commitdiff \| raw \| diff to current
2010-03-16	westcott	modified mpi code to save ram by writing out every...	blob \| commitdiff \| raw \| diff to current
2010-03-12	westcott	added MPI to dist.seqs command	blob \| commitdiff \| raw \| diff to current
2010-03-11	westcott	testing mpi	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2009-12-02	westcott	modified sequence class to read fasta files with commen...	blob \| commitdiff \| raw \| diff to current
2009-09-09	westcott	continued work on chimeras and fixed bug in trim.seqs...	blob \| commitdiff \| raw \| diff to current
2009-07-22	westcott	changed sequence class so that when constructor is...	blob \| commitdiff \| raw \| diff to current
2009-07-08	westcott	added list.seqs command	blob \| commitdiff \| raw \| diff to current
2009-06-16	pschloss	a few minor things - pds	blob \| commitdiff \| raw \| diff to current
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	blob \| commitdiff \| raw \| diff to current
2009-06-06	pschloss	added trim.seqs command	blob \| commitdiff \| raw \| diff to current
2009-06-04	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-04	pschloss	pat's edits of screen.seqs and summary.seqs	blob \| commitdiff \| raw \| diff to current
2009-06-03	pschloss	fixed a bug in calculating the # of ambig bases	blob \| commitdiff \| raw \| diff to current
2009-06-03	pschloss	addition of summary.seq command [pds]	blob \| commitdiff \| raw \| diff to current
2009-05-24	pschloss	This contains Pat's bug fixes and updates. It represen...	blob \| commitdiff \| raw \| diff to current
2009-05-18	westcott	added alignment code	blob \| commitdiff \| raw \| diff to current
2009-05-12	westcott	added distance command and filterseqs	blob \| commitdiff \| raw \| diff to current
2009-05-08	ryabin	filterseqscommand added	blob \| commitdiff \| raw \| diff to current
2009-05-04	ryabin	* empty log message *	blob \| commitdiff \| raw \| diff to current
2009-02-19	westcott	added mothur.h and fixed includes in many files	blob \| commitdiff \| raw \| diff to current
2009-01-16	westcott	Initial revision	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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