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]> git.donarmstrong.com Git - mothur.git/history - parsimonycommand.cpp

2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-08-09	westcott	added count.groups command and paralellized align.seqs...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-07	westcott	fixed bug with tree reading	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	added getCommandInfoCommand for gui	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2010-12-03	westcott	fixed craig nelsons weighted bug and paralellized parsimony	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	fixes while testing	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-01-26	westcott	added set.dir command and modified commands to redirect...	blob \| commitdiff \| raw \| diff to current
2009-08-03	westcott	bugs for 1.5	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	blob \| commitdiff \| raw \| diff to current
2009-06-12	westcott	broke up globaldata and moved error checking and help...	blob \| commitdiff \| raw \| diff to current
2009-04-21	westcott	fixed bug with parsimony(groups=all) and unifrac.unweig...	blob \| commitdiff \| raw \| diff to current
2009-04-17	westcott	added bootstrap.shared command and fixed some bugs...	blob \| commitdiff \| raw \| diff to current
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	blob \| commitdiff \| raw \| diff to current
2009-04-08	westcott	fixed bug in read.tree updates help and validparameters...	blob \| commitdiff \| raw \| diff to current
2009-04-06	westcott	fixed memory leak in parsimony calculator and added...	blob \| commitdiff \| raw \| diff to current
2009-03-23	westcott	put back no command and worked on libshuff	blob \| commitdiff \| raw \| diff to current
2009-03-19	westcott	fixed memory leak globaldata container structures,...	blob \| commitdiff \| raw \| diff to current
2009-03-16	westcott	added nseqs and sharednseqs calculators, removed excess...	blob \| commitdiff \| raw \| diff to current
2009-03-09	westcott	fixed valid parameters to include shared parameter...	blob \| commitdiff \| raw \| diff to current
2009-03-07	pschloss	mucked around some with the output in the unifrac.weigh...	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	got rid of rd_parsimony ext.	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	fixed bug wit unifrac files	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	fixed bug in random option of parsimony()	blob \| commitdiff \| raw \| diff to current
2009-03-06	westcott	changed format of output in unifrac and parsimony files	blob \| commitdiff \| raw \| diff to current
2009-03-04	westcott	unifrac.weighted	blob \| commitdiff \| raw \| diff to current
2009-03-03	westcott	parsimony output changed	blob \| commitdiff \| raw \| diff to current
2009-02-27	westcott	fixed parsimony with groups and worked on unifrac.unwei...	blob \| commitdiff \| raw \| diff to current
2009-02-26	westcott	parsimony with groups	blob \| commitdiff \| raw \| diff to current
2009-02-26	westcott	parsimony with groups	blob \| commitdiff \| raw \| diff to current
2009-02-24	westcott	changed unifrac.weighted()	blob \| commitdiff \| raw \| diff to current
2009-02-23	westcott	fixed parsimony for groups	blob \| commitdiff \| raw \| diff to current
2009-02-20	westcott	fixed unweighted calculator	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	parsimony command now uses groups, fixed bug with unwei...	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	parsimony command now uses groups, fixed bug with unwei...	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	minor bugs fixes and added line and label options to...	blob \| commitdiff \| raw \| diff to current
2009-02-11	westcott	adding treeclimber and unifrac pieces	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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