git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - mothurout.h

2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	blob \| commitdiff \| raw
2013-04-05	SarahsWork	added method parameter to get.oturep. options method...	blob \| commitdiff \| raw \| diff to current
2013-03-18	SarahsWork	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-03-18	SarahsWork	working on dereplicate=t issue in chimera.slayer and...	blob \| commitdiff \| raw \| diff to current
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	blob \| commitdiff \| raw \| diff to current
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	blob \| commitdiff \| raw \| diff to current
2013-01-18	Sarah Westcott	fixed seq. error align=f issue. added std and ave calcs...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	added sets to amova and homova commands. added oligos...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-10-02	Sarah Westcott	added classify.shared command and random forest files...	blob \| commitdiff \| raw \| diff to current
2012-09-25	Sarah Westcott	added count file to get.oturep, pre.cluster, screen...	blob \| commitdiff \| raw \| diff to current
2012-09-11	Sarah Westcott	added count file to get.groups and remove.groups. added...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-06-28	Sarah Westcott	added countable class to read and store count file...	blob \| commitdiff \| raw \| diff to current
2012-06-26	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-06-26	Sarah Westcott	made make.table alias to count.seqs command. added...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added phylip as output file type for commands that...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-06-12	Sarah Westcott	changed reading of name file to use buffered reads...	blob \| commitdiff \| raw \| diff to current
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-29	Sarah Westcott	added code to check path for uchime and catchall execut...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	blob \| commitdiff \| raw \| diff to current
2012-05-09	John Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-05-09	John Westcott	added debug flag to mothurOut. added debug parameter...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-20	Sarah Westcott	added uchime_src folder. added biom parameter to make...	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	changed rarefaction.single output	blob \| commitdiff \| raw \| diff to current
2011-11-28	westcott	added fontsize to heatmap.sim, paralellized chimera...	blob \| commitdiff \| raw \| diff to current
2011-11-07	westcott	working on chimera.perseus. made removeConfidences...	blob \| commitdiff \| raw \| diff to current
2011-09-23	westcott	added summary.tax command and fixed bug with root level...	blob \| commitdiff \| raw \| diff to current
2011-09-21	westcott	finished added bygroup processing of chimeras in chimer...	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-07-18	westcott	changed normalize.shared and sub.sample commands to...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-07-06	westcott	added save parameter to align.seqs, chimera commands...	blob \| commitdiff \| raw \| diff to current
2011-06-28	westcott	indicator command	blob \| commitdiff \| raw \| diff to current
2011-06-01	westcott	added headers to shared and relabund files	blob \| commitdiff \| raw \| diff to current
2011-05-24	westcott	paralellized seq.error and dist.shared added some error...	blob \| commitdiff \| raw \| diff to current
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	blob \| commitdiff \| raw \| diff to current
2011-05-16	westcott	added chimera.uchime	blob \| commitdiff \| raw \| diff to current
2011-04-26	westcott	added current as option is lists of file names, process...	blob \| commitdiff \| raw \| diff to current
2011-04-18	westcott	modified chimera.slayer template=self	blob \| commitdiff \| raw \| diff to current
2011-04-15	westcott	1.18.1	blob \| commitdiff \| raw \| diff to current
2011-04-11	westcott	fixed sub.sample groups bug	blob \| commitdiff \| raw \| diff to current
2011-04-08	westcott	fixing bugs while testing	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-03-11	westcott	added namefile to align.check and added seqs from namef...	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	modified trim.seqs to speed up the append with multiple...	blob \| commitdiff \| raw \| diff to current
2010-10-29	westcott	added cluster.classic command	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-08-06	westcott	added versioning info to all shortcut files mothur...	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added compile time default path	blob \| commitdiff \| raw \| diff to current
2010-06-30	westcott	modified trim.seqs to split by primer name if primer...	blob \| commitdiff \| raw \| diff to current
2010-04-14	westcott	some changes while testing 1.9	blob \| commitdiff \| raw \| diff to current
2010-03-11	westcott	testing mpi	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-03-01	westcott	adding mothurout.h and .cpp to repo	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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