git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - mothurout.cpp

2013-06-24	Sarah Westcott	added kruskal.wallis command. added worked on make...	blob \| commitdiff \| raw
2013-06-13	Sarah Westcott	added make.lefse command. fixed bug in make.contigs...	blob \| commitdiff \| raw \| diff to current
2013-05-23	Abu Zaher Md. Faridee	Merge branch 'master' into dev-ml	blob \| commitdiff \| raw \| diff to current
2013-05-17	Sarah Westcott	changed how rarefaction commands find the lci and hci...	blob \| commitdiff \| raw \| diff to current
2013-05-17	Sarah Westcott	added modify names parameter to set.dir	blob \| commitdiff \| raw \| diff to current
2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	blob \| commitdiff \| raw \| diff to current
2013-04-19	SarahsWork	paralellized unifrac.weighted for windows. added get...	blob \| commitdiff \| raw \| diff to current
2013-04-05	SarahsWork	added method parameter to get.oturep. options method...	blob \| commitdiff \| raw \| diff to current
2013-03-18	SarahsWork	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-03-18	SarahsWork	working on dereplicate=t issue in chimera.slayer and...	blob \| commitdiff \| raw \| diff to current
2013-03-02	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-27	SarahsWork	mods to resolve some misc warnings. added alignPrimer...	blob \| commitdiff \| raw \| diff to current
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-11	Sarah Westcott	added ':' name check to seq. error and fastq.info....	blob \| commitdiff \| raw \| diff to current
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	blob \| commitdiff \| raw \| diff to current
2013-01-28	Sarah Westcott	added checks to make sure windows processes completed...	blob \| commitdiff \| raw \| diff to current
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	blob \| commitdiff \| raw \| diff to current
2013-01-18	Sarah Westcott	fixed seq. error align=f issue. added std and ave calcs...	blob \| commitdiff \| raw \| diff to current
2012-11-02	Sarah Westcott	fix to summary.tax for 1.28.0	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	classify.seqs allows sequences to be in taxonomy file...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-22	Sarah Westcott	added sets to amova and homova commands. added oligos...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-10-02	Sarah Westcott	added classify.shared command and random forest files...	blob \| commitdiff \| raw \| diff to current
2012-09-25	Sarah Westcott	added count file to get.oturep, pre.cluster, screen...	blob \| commitdiff \| raw \| diff to current
2012-09-11	Sarah Westcott	added count file to get.groups and remove.groups. added...	blob \| commitdiff \| raw \| diff to current
2012-08-24	Sarah Westcott	added sff.multiple command. fixed issue with windows...	blob \| commitdiff \| raw \| diff to current
2012-08-06	Sarah Westcott	changes while testing 1.27	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-30	Sarah Westcott	fixed subsample name file name issue. added count...	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-06-26	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-06-26	Sarah Westcott	made make.table alias to count.seqs command. added...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added phylip as output file type for commands that...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-06-12	Sarah Westcott	changed reading of name file to use buffered reads...	blob \| commitdiff \| raw \| diff to current
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-29	Sarah Westcott	added code to check path for uchime and catchall execut...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-23	Sarah Westcott	bugs found while testing	blob \| commitdiff \| raw \| diff to current
2012-04-20	Sarah Westcott	added uchime_src folder. added biom parameter to make...	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-03	Sarah Westcott	working on adding subsampling to dist.shared. fixed...	blob \| commitdiff \| raw \| diff to current
2012-04-02	Sarah Westcott	added create.database command. fixed help in get.shared...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	changed rarefaction.single output	blob \| commitdiff \| raw \| diff to current
2011-12-06	westcott	metastats in progress	blob \| commitdiff \| raw \| diff to current
2011-11-28	westcott	added fontsize to heatmap.sim, paralellized chimera...	blob \| commitdiff \| raw \| diff to current
2011-11-07	westcott	working on chimera.perseus. made removeConfidences...	blob \| commitdiff \| raw \| diff to current
2011-10-26	westcott	paralellized chimera.uchime for windows for both by...	blob \| commitdiff \| raw \| diff to current
2011-10-24	westcott	added processors to pre.cluster for mac and windows...	blob \| commitdiff \| raw \| diff to current
2011-09-23	westcott	added summary.tax command and fixed bug with root level...	blob \| commitdiff \| raw \| diff to current
2011-09-21	westcott	finished added bygroup processing of chimeras in chimer...	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-27	westcott	1.21.0	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-28	westcott	indicator command	blob \| commitdiff \| raw \| diff to current
2011-05-24	westcott	paralellized seq.error and dist.shared added some error...	blob \| commitdiff \| raw \| diff to current
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	blob \| commitdiff \| raw \| diff to current
2011-05-16	westcott	added chimera.uchime	blob \| commitdiff \| raw \| diff to current
2011-05-09	westcott	1.19.0	blob \| commitdiff \| raw \| diff to current
2011-04-26	westcott	added current as option is lists of file names, process...	blob \| commitdiff \| raw \| diff to current
2011-04-18	westcott	modified chimera.slayer template=self	blob \| commitdiff \| raw \| diff to current
2011-04-15	westcott	1.18.1	blob \| commitdiff \| raw \| diff to current
2011-04-08	westcott	fixing bugs while testing	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-03-11	westcott	added namefile to align.check and added seqs from namef...	blob \| commitdiff \| raw \| diff to current
2011-01-04	westcott	Changed back to xcode build.	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	fixed bug with trim.seqs- when a file is blank for...	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	modified trim.seqs to speed up the append with multiple...	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	added summary output to catchall command	blob \| commitdiff \| raw \| diff to current
2010-11-19	westcott	added indicator command	blob \| commitdiff \| raw \| diff to current
2010-11-12	westcott	added get.otus and remove.otus commands	blob \| commitdiff \| raw \| diff to current
2010-11-09	westcott	parsimony calculator changed order of groups to reflect...	blob \| commitdiff \| raw \| diff to current
2010-11-08	westcott	fixed cluster.split bug	blob \| commitdiff \| raw \| diff to current
2010-10-29	westcott	added cluster.classic command	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-09-23	westcott	added cluster.fragments command as well as the nseqs...	blob \| commitdiff \| raw \| diff to current
2010-09-21	westcott	added split.groups command	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	bug fixes	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	working on megastats	blob \| commitdiff \| raw \| diff to current
2010-09-16	westcott	initial add of metastats	blob \| commitdiff \| raw \| diff to current
2010-08-27	westcott	fixed phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-08-26	pschloss	modified splitAtComma in mothurout command	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added compile time default path	blob \| commitdiff \| raw \| diff to current
2010-07-14	westcott	working on sffinfo command.	blob \| commitdiff \| raw \| diff to current
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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