git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - makefile

2013-07-17	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw
2013-05-29	Sarah Westcott	get.seqs not renaming sequences correctly for dups...	blob \| commitdiff \| raw
2013-05-28	Sarah Westcott	citation changes for 1.31.0	blob \| commitdiff \| raw \| diff to current
2013-05-23	Abu Zaher Md. Faridee	Merge branch 'master' into dev-ml	blob \| commitdiff \| raw \| diff to current
2013-05-23	Sarah Westcott	changes while testing	blob \| commitdiff \| raw \| diff to current
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-15	SarahsWork	test commit	blob \| commitdiff \| raw \| diff to current
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	classify.seqs allows sequences to be in taxonomy file...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-09-14	Sarah Westcott	added count file to trim.seqs, get.groups, get.lineage...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Sarah Westcott	changes while testing 1.26	blob \| commitdiff \| raw \| diff to current
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-22	Sarah Westcott	added debug output classify.seqs. worked on make.contig...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-02	Sarah Westcott	removing chime source files from mother project.	blob \| commitdiff \| raw \| diff to current
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-27	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-27	Sarah Westcott	changes while testing.	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	fixed makefile	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-09	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	pschloss	* empty log message *	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	added qvalues to metastats. fixed bug with chimera...	blob \| commitdiff \| raw \| diff to current
2011-10-24	westcott	added processors to pre.cluster for mac and windows...	blob \| commitdiff \| raw \| diff to current
2011-10-18	westcott	1.22.0	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-27	westcott	1.21.0	blob \| commitdiff \| raw \| diff to current
2011-07-20	westcott	1.21.0	blob \| commitdiff \| raw \| diff to current
2011-07-06	westcott	added save parameter to align.seqs, chimera commands...	blob \| commitdiff \| raw \| diff to current
2011-03-11	westcott	added namefile to summary.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-16	pschloss	bug fix to seq.error	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	fixed an mpi bug in shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	mods to seq.errror	blob \| commitdiff \| raw \| diff to current
2011-02-14	pschloss	* empty log message *	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added amova command	blob \| commitdiff \| raw \| diff to current
2011-01-04	westcott	removed parse.sff command and made its functionality...	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	metastats double* to double fix for windows	blob \| commitdiff \| raw \| diff to current
2010-11-29	westcott	added consensus.seqs command	blob \| commitdiff \| raw \| diff to current
2010-11-19	westcott	added indicator command	blob \| commitdiff \| raw \| diff to current
2010-11-02	westcott	changed cluster.classic so that it does not adjust...	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	done testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-25	westcott	testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-05	westcott	paralellized phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-09-30	westcott	added parse.fastaq command, added permute option to...	blob \| commitdiff \| raw \| diff to current
2010-09-28	westcott	added distance option to summary.shared	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	bug fixes	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	working on megastats	blob \| commitdiff \| raw \| diff to current
2010-09-15	westcott	paralellized summary.shared	blob \| commitdiff \| raw \| diff to current
2010-09-09	westcott	done testing 1.13.0	blob \| commitdiff \| raw \| diff to current
2010-08-27	westcott	fixed phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-08-06	westcott	added versioning info to all shortcut files mothur...	blob \| commitdiff \| raw \| diff to current
2010-08-02	westcott	fixed bug with phylo.diversity. not calculating as...	blob \| commitdiff \| raw \| diff to current
2010-07-30	westcott	changes for 1.12.2	blob \| commitdiff \| raw \| diff to current
2010-07-30	westcott	changes for 1.12.2	blob \| commitdiff \| raw \| diff to current
2010-07-29	westcott	1.12.1	blob \| commitdiff \| raw \| diff to current
2010-07-29	pschloss	pds' small change to sffinfo	blob \| commitdiff \| raw \| diff to current
2010-07-28	westcott	some bug fixes	blob \| commitdiff \| raw \| diff to current
2010-07-23	westcott	1.12.0	blob \| commitdiff \| raw \| diff to current
2010-07-20	westcott	added tempdefault to set.dir and fixed bug with padding...	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added ordergroup parameter to read.otu	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added compile time default path	blob \| commitdiff \| raw \| diff to current
2010-07-19	westcott	added fasta, qfile, trim, accnos and sfftxt parameter...	blob \| commitdiff \| raw \| diff to current
2010-07-14	westcott	started work on sffinfo command. fixed bug across...	blob \| commitdiff \| raw \| diff to current
2010-07-07	pschloss	modified makefile and sensspeccommand files	blob \| commitdiff \| raw \| diff to current
2010-07-06	pschloss	sens.spec changes	blob \| commitdiff \| raw \| diff to current
2010-06-30	westcott	modified trim.seqs to split by primer name if primer...	blob \| commitdiff \| raw \| diff to current
2010-06-22	westcott	added mpi code to cluster.split command	blob \| commitdiff \| raw \| diff to current
2010-06-22	westcott	added mpi code to cluster.split command	blob \| commitdiff \| raw \| diff to current
2010-06-21	westcott	added degap.seqs command	blob \| commitdiff \| raw \| diff to current
2010-06-18	westcott	removed blast files generated by chimera.slayer, altere...	blob \| commitdiff \| raw \| diff to current
2010-06-18	westcott	fixed problem with chimera.slayer realigner	blob \| commitdiff \| raw \| diff to current
2010-06-17	pschloss	made a small mod to the alignment parameters in trim...	blob \| commitdiff \| raw \| diff to current
2010-06-14	westcott	fixed bug in cluster.split	blob \| commitdiff \| raw \| diff to current
2010-06-12	pschloss	pat's mod to trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-06-10	westcott	committing so I can work on the other machine	blob \| commitdiff \| raw \| diff to current
2010-06-09	pschloss	added weightedlinkage.cpp	blob \| commitdiff \| raw \| diff to current
2010-06-09	westcott	changes to blastdb to make filenames given to blast...	blob \| commitdiff \| raw \| diff to current
2010-06-02	westcott	added classify.otu command	blob \| commitdiff \| raw \| diff to current
2010-06-01	westcott	changed the daughterLevels in classifiers summary file...	blob \| commitdiff \| raw \| diff to current
2010-05-28	westcott	changed hard parameter in cluster commands	blob \| commitdiff \| raw \| diff to current
2010-05-27	westcott	changes to chop.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-26	pschloss	fixed bugs with trim.seqs and bdiffs	blob \| commitdiff \| raw \| diff to current
2010-05-20	westcott	added cluster.split command	blob \| commitdiff \| raw \| diff to current
2010-05-18	westcott	added split.abund comand	blob \| commitdiff \| raw \| diff to current
2010-05-12	westcott	modified freq parameter be a percentage of numSeqs...	blob \| commitdiff \| raw \| diff to current
2010-05-11	westcott	added clearcut command	blob \| commitdiff \| raw \| diff to current
2010-05-10	westcott	added chop.seqs command	blob \| commitdiff \| raw \| diff to current
2010-05-10	westcott	added make.group command	blob \| commitdiff \| raw \| diff to current
2010-05-10	pschloss	pds - modified strip barcode funcrtion in trimseqscommand	blob \| commitdiff \| raw \| diff to current
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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