| 2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-22 |
westcott | fixed clearcut version bug, added group count output... |
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| 2010-12-06 |
westcott | modified trim.seqs to speed up the append with multiple... |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-17 |
westcott | working on megastats |
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| 2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer... |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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| 2009-09-02 |
westcott | updated pats contact and mothur header info |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-08 |
westcott | added help for heatmap.sim |
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| 2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
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| 2009-06-04 |
westcott | fixed some bugs |
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| 2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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| 2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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| 2009-05-22 |
westcott | changed defaults in allign.seqs command |
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| 2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
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| 2009-05-21 |
westcott | added dist.shared command |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
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| 2009-05-14 |
westcott | fixed bug in venn command |
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| 2009-05-13 |
westcott | changed name of distance command to dist.seqs |
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| 2009-05-13 |
westcott | fixed bug with getting sharedrabunds for venn, heatmap... |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
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| 2009-04-14 |
westcott | removed "shared" from some of the calculator names... |
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| 2009-04-14 |
westcott | added log10 and log2 scalers for heatmap |
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| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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| 2009-04-08 |
westcott | fixed bug in read.tree updates help and validparameters... |
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| 2009-04-06 |
westcott | added get.oturep command |
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| 2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added... |
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| 2009-04-03 |
westcott | venn command with up to 4 groups using sharedsobs,... |
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| 2009-03-31 |
westcott | started venn command |
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| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
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| 2009-03-19 |
westcott | updated errorchecking so it checks if the parameter... |
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| 2009-03-19 |
westcott | libshuff and updated help to include libshuff and modif... |
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| 2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
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| 2009-03-09 |
westcott | fixed valid parameters to include shared parameter... |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
westcott | parsimony command now uses groups, fixed bug with unwei... |
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| 2009-02-18 |
westcott | minor bugs fixes and added line and label options to... |
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| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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| 2009-02-11 |
westcott | added errorchecking and help info on new unifrac and... |
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| 2009-01-28 |
westcott | updated help |
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| 2009-01-28 |
pschloss | I've changed the listfile, sabundfile, etc. option... |
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| 2009-01-21 |
westcott | deconvolute command |
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| 2009-01-20 |
westcott | changed read.shared to read.list and incorporated the... |
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| 2009-01-16 |
westcott | Initial revision |
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projects / mothur.git / history