git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - engine.cpp

2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	blob \| commitdiff \| raw
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-05-29	Sarah Westcott	added code to check path for uchime and catchall execut...	blob \| commitdiff \| raw \| diff to current
2012-05-14	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-05-14	Sarah Westcott	added debug info to engines function to get mother...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-06	westcott	metastats in progress	blob \| commitdiff \| raw \| diff to current
2011-08-22	westcott	added multiple processors option for Windows users...	blob \| commitdiff \| raw \| diff to current
2011-07-18	westcott	changed normalize.shared and sub.sample commands to...	blob \| commitdiff \| raw \| diff to current
2011-06-09	pschloss	some of pat's small modifications	blob \| commitdiff \| raw \| diff to current
2011-06-01	westcott	added headers to shared and relabund files	blob \| commitdiff \| raw \| diff to current
2011-04-15	westcott	1.18.1	blob \| commitdiff \| raw \| diff to current
2011-04-11	westcott	fixed sub.sample groups bug	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-02-14	westcott	fixed catchall PATH variable bug added trimera to chime...	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2011-01-07	westcott	working on chimera change to add trim feature, fixed...	blob \| commitdiff \| raw \| diff to current
2011-01-05	westcott	removed various build warnings	blob \| commitdiff \| raw \| diff to current
2010-09-24	westcott	added get.lineage and remove.lineage commands	blob \| commitdiff \| raw \| diff to current
2010-09-03	westcott	working on testing	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-08-03	westcott	modified the engine to extract the path of mothur execu...	blob \| commitdiff \| raw \| diff to current
2010-07-29	westcott	1.12.1	blob \| commitdiff \| raw \| diff to current
2010-07-28	westcott	some bug fixes	blob \| commitdiff \| raw \| diff to current
2010-07-15	westcott	sffinfo command is working	blob \| commitdiff \| raw \| diff to current
2010-06-01	westcott	changed the daughterLevels in classifiers summary file...	blob \| commitdiff \| raw \| diff to current
2010-06-01	westcott	latest version	blob \| commitdiff \| raw \| diff to current
2010-05-20	westcott	added cluster.split command	blob \| commitdiff \| raw \| diff to current
2010-05-07	westcott	changed groupfile in classify.seqs to reflect multiple...	blob \| commitdiff \| raw \| diff to current
2010-04-20	westcott	a few modifications for 1.9	blob \| commitdiff \| raw \| diff to current
2010-03-12	westcott	added MPI to dist.seqs command	blob \| commitdiff \| raw \| diff to current
2010-03-11	westcott	testing mpi	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-03-01	westcott	adding mothurout.h and .cpp to repo	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-02-12	westcott	working on chimeras	blob \| commitdiff \| raw \| diff to current
2009-12-21	westcott	fixed some bugs and added mgcluster command	blob \| commitdiff \| raw \| diff to current
2009-12-09	westcott	added sorted parameter to get.oturep, added error check...	blob \| commitdiff \| raw \| diff to current
2009-12-08	westcott	added list parameter to get.seqs and remove.seqs and...	blob \| commitdiff \| raw \| diff to current
2009-12-02	westcott	modified sequence class to read fasta files with commen...	blob \| commitdiff \| raw \| diff to current
2009-08-03	westcott	bugs for 1.5	blob \| commitdiff \| raw \| diff to current
2009-08-02	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-07-20	westcott	fixed bugs in venn and aligner	blob \| commitdiff \| raw \| diff to current
2009-07-09	westcott	added getline function to mothur and modified places...	blob \| commitdiff \| raw \| diff to current
2009-06-29	westcott	fixed bug in bootstrap command that was caused by globa...	blob \| commitdiff \| raw \| diff to current
2009-06-29	westcott	modified read.otu and shared command	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-23	pschloss	mothur v.1.4.1	blob \| commitdiff \| raw \| diff to current
2009-06-21	pschloss	This is v.1.4.0	blob \| commitdiff \| raw \| diff to current
2009-06-18	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-16	westcott	fixed some bugs and added scriptengine	blob \| commitdiff \| raw \| diff to current
2009-06-15	westcott	fixing minor bugs	blob \| commitdiff \| raw \| diff to current
2009-06-12	westcott	broke up globaldata and moved error checking and help...	blob \| commitdiff \| raw \| diff to current
2009-06-04	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-03	pschloss	addition of summary.seq command [pds]	blob \| commitdiff \| raw \| diff to current
2009-06-02	westcott	allow user to input quit instead of quit()	blob \| commitdiff \| raw \| diff to current
2009-05-27	westcott	fixed multiple bugs for 1.4 release	blob \| commitdiff \| raw \| diff to current
2009-05-21	westcott	added ability to put # in front of any line in the...	blob \| commitdiff \| raw \| diff to current
2009-05-21	westcott	fixed blast code path problem	blob \| commitdiff \| raw \| diff to current
2009-04-20	pschloss	pds fixes of heatmap and some other minor stuff	blob \| commitdiff \| raw \| diff to current
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	blob \| commitdiff \| raw \| diff to current
2009-02-19	westcott	added mothur.h and fixed includes in many files	blob \| commitdiff \| raw \| diff to current
2009-02-18	westcott	minor bugs fixes and added line and label options to...	blob \| commitdiff \| raw \| diff to current
2009-01-30	pschloss	When Pat tried to compile mothur in Ubuntu linux, there...	blob \| commitdiff \| raw \| diff to current
2009-01-16	westcott	Initial revision	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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