| 2014-02-03 |
Sarah Westcott | added mergesfffiles command. added current directories... |
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| 2014-01-08 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-12-03 |
Sarah Westcott | added oligos, group, pdiffs, bdiffs, ldiffs, sdiffs... |
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| 2013-10-18 |
Sarah Westcott | modifications to commands to add headers to list file. |
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| 2013-10-02 |
Sarah Westcott | changes while testing |
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| 2013-09-18 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
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| 2013-09-16 |
Kathryn Iverson | changing command name classify.shared to classifyrf... |
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| 2013-09-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-08-14 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
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| 2013-08-14 |
Sarah Westcott | changed name of get.metacommunity to get.communitytype... |
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| 2013-07-17 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-06-24 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
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| 2013-06-24 |
Sarah Westcott | added kruskal.wallis command. added worked on make... |
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| 2013-06-13 |
Sarah Westcott | added make.lefse command. fixed bug in make.contigs... |
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| 2013-05-29 |
Sarah Westcott | added rename.seqs command. |
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| 2013-05-23 |
Abu Zaher Md. Faridee | Merge branch 'master' into dev-ml |
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| 2013-05-15 |
Sarah Westcott | added make.lookup command. |
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| 2013-05-13 |
Sarah Westcott | added sparcc command. fixed bug in remove.groups that... |
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| 2013-04-12 |
SarahsWork | added get.metacommunity command. |
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| 2013-02-18 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-02-13 |
Sarah Westcott | added merge.taxsummary command. added column format... |
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| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-29 |
Sarah Westcott | added get.dists and remove.dists commands. fixed bug... |
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| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux... |
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| 2013-01-16 |
Sarah Westcott | added topdown parameter to pre.cluster. added more... |
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| 2013-01-04 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2013-01-04 |
Sarah Westcott | added filter.shared command. fixed lci and uci for... |
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| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-10-02 |
Sarah Westcott | added classify.shared command and random forest files... |
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| 2012-08-21 |
Sarah Westcott | added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs... |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-07-03 |
Kathryn Iverson | Merge branch 'master' of https://github.com/mothur... |
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| 2012-06-26 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-06-26 |
Sarah Westcott | made make.table alias to count.seqs command. added... |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-05-31 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-21 |
Sarah Westcott | added get.otulabels and remove.otulabels commands per... |
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| 2012-05-18 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-05-18 |
Sarah Westcott | added check to cluster.classic to make sure file type... |
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| 2012-05-16 |
Kathryn Iverson | Merge branch 'master' of https://github.com/mothur... |
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| 2012-05-15 |
Sarah Westcott | added list.labels command. started work on make.contigs... |
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| 2012-05-14 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-10 |
Sarah Westcott | fixed typos |
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| 2012-05-10 |
Sarah Westcott | added abundance and sample parameters to get.coremicrob... |
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| 2012-05-09 |
Sarah Westcott | working on get.coremicrobiom |
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| 2012-05-09 |
John Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-05-09 |
John Westcott | added debug flag to mothurOut. added debug parameter... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-17 |
Sarah Westcott | added make.biom command |
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| 2012-04-11 |
Sarah Westcott | fixed bug with windows version of trim.seqs when run... |
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| 2012-04-10 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-05 |
Sarah Westcott | added subsample, tiers and processors to tree.shared... |
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| 2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-02 |
Sarah Westcott | added create.database command. fixed help in get.shared... |
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| 2012-03-28 |
Sarah Westcott | minor changes to pcr.seqs. Added filterToPos and filte... |
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| 2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
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| 2012-03-02 |
Sarah Westcott | added cooccurence command |
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| 2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
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| 2012-02-06 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-02-06 |
Sarah Westcott | added sort.seqs command. puts sequences from a fasta... |
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| 2012-01-25 |
westcott | added otu.association command. added calcSpearman,... |
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| 2011-11-29 |
westcott | Added summary.qual command. Added fontsize parameter... |
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| 2011-11-28 |
westcott | added fontsize to heatmap.sim, paralellized chimera... |
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| 2011-11-11 |
westcott | fixed bug with trim.flows that was adding flow files... |
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| 2011-11-07 |
westcott | working on chimera.perseus. made removeConfidences... |
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| 2011-10-07 |
westcott | testing 1.22.0 |
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| 2011-09-23 |
westcott | added summary.tax command and fixed bug with root level... |
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| 2011-09-14 |
westcott | adds group parameter to chimera.uchime so you can check... |
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| 2011-08-09 |
westcott | added count.groups command and paralellized align.seqs... |
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| 2011-07-06 |
westcott | added save parameter to align.seqs, chimera commands... |
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| 2011-06-01 |
westcott | added count.seqs command and made some modifcations... |
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| 2011-05-27 |
westcott | added deunique.tree command |
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| 2011-05-16 |
westcott | added chimera.uchime |
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| 2011-04-25 |
westcott | fixed ties issue in maligner getBlastSeqs |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-02-15 |
westcott | working on anosim command |
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| 2011-02-14 |
westcott | added make.fastq command |
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| 2011-02-09 |
westcott | added mantel command |
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| 2011-02-08 |
westcott | added homova command |
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| 2011-02-08 |
westcott | added amova command |
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| 2011-01-24 |
westcott | added merge.groups command |
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| 2011-01-21 |
westcott | added calcs to tree.shared. working on remove.rare... |
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| 2011-01-14 |
westcott | fixed trim.seqs bug with qtrim parameter and added... |
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| 2011-01-10 |
westcott | pca command |
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| 2011-01-05 |
westcott | added pearson coefficient metric to pcoa |
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| 2011-01-04 |
westcott | removed parse.sff command and made its functionality... |
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| 2010-12-31 |
pschloss | added shhh.seqs command |
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| 2010-12-23 |
pschloss | addition of trim.flows |
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| 2010-12-23 |
westcott | fixed memory leak in decalc findClosest function used... |
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| 2010-11-29 |
westcott | added consensus.seqs command |
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| 2010-11-19 |
westcott | added indicator command |
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| 2010-11-12 |
westcott | added get.otus and remove.otus commands |
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| 2010-11-10 |
westcott | added get.groups and remove.groups commands |
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| 2010-11-05 |
westcott | fixed metastats, added resize to cluster.classic, added... |
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| 2010-10-29 |
westcott | added cluster.classic command |
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| 2010-10-20 |
westcott | added pairwise.seqs |
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