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]> git.donarmstrong.com Git - mothur.git/history - clustercommand.cpp

2013-01-08	Sarah Westcott	added dereplicate parameter to chimera.slayer and chime...	blob \| commitdiff \| raw
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	Merge remote-tracking branch 'origin/master'	blob \| commitdiff \| raw \| diff to current
2012-10-30	Sarah Westcott	classify.seqs allows sequences to be in taxonomy file...	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-08-08	Sarah Westcott	added SequenceCountParser class to parse the count...	blob \| commitdiff \| raw \| diff to current
2012-08-06	Sarah Westcott	changes while testing 1.27	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-30	Sarah Westcott	fixed subsample name file name issue. added count...	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-10-24	westcott	added processors to pre.cluster for mac and windows...	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-04-15	westcott	1.18.1	blob \| commitdiff \| raw \| diff to current
2011-04-11	westcott	1.18.0	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	added getCommandInfoCommand for gui	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	fixes while testing	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-09-23	westcott	added cluster.fragments command as well as the nseqs...	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-08-19	westcott	modified calculators to use doubles, added numotu and...	blob \| commitdiff \| raw \| diff to current
2010-06-09	pschloss	added weightedlinkage.cpp	blob \| commitdiff \| raw \| diff to current
2010-05-28	westcott	changed hard parameter in cluster commands	blob \| commitdiff \| raw \| diff to current
2010-05-04	westcott	added phylo.diversity command. added hard parameter...	blob \| commitdiff \| raw \| diff to current
2010-04-14	westcott	some changes while testing 1.9	blob \| commitdiff \| raw \| diff to current
2010-04-07	westcott	added MPI code, broke up chimera.seqs into 5 separated...	blob \| commitdiff \| raw \| diff to current
2010-03-01	westcott	adding mothurout.h and .cpp to repo	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-02-25	westcott	added parse.list command	blob \| commitdiff \| raw \| diff to current
2010-02-23	westcott	added warning about merging with something above cutoff...	blob \| commitdiff \| raw \| diff to current
2010-02-23	westcott	added warning about merging with something above cutoff...	blob \| commitdiff \| raw \| diff to current
2010-01-26	westcott	added set.dir command and modified commands to redirect...	blob \| commitdiff \| raw \| diff to current
2010-01-19	westcott	added warning about average neighbor merges around...	blob \| commitdiff \| raw \| diff to current
2009-10-29	westcott	fixed bug with hcluster	blob \| commitdiff \| raw \| diff to current
2009-10-29	westcott	added hcluster command and fixed some bugs, namely...	blob \| commitdiff \| raw \| diff to current
2009-07-30	westcott	Thallinger changes to cluster command.	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-18	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-15	westcott	fixing minor bugs	blob \| commitdiff \| raw \| diff to current
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	blob \| commitdiff \| raw \| diff to current
2009-06-12	westcott	broke up globaldata and moved error checking and help...	blob \| commitdiff \| raw \| diff to current
2009-03-09	westcott	fixed memory issue with cluster command	blob \| commitdiff \| raw \| diff to current
2009-03-05	westcott	working on readtree	blob \| commitdiff \| raw \| diff to current
2009-01-20	westcott	changed read.shared to read.list and incorporated the...	blob \| commitdiff \| raw \| diff to current
2009-01-16	westcott	Initial revision	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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