| 2013-04-22 |
SarahsWork | added flag to count table read so that commands that... |
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| 2013-04-19 |
SarahsWork | added mothurOutJustToScreen function and changed all... |
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| 2013-04-08 |
SarahsWork | added rarepercent and keepties parameters to the filter... |
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| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed... |
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| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux... |
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| 2013-01-16 |
Sarah Westcott | added topdown parameter to pre.cluster. added more... |
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| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename... |
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| 2012-10-30 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-10-30 |
Sarah Westcott | classify.seqs allows sequences to be in taxonomy file... |
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| 2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos... |
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| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-10-03 |
Sarah Westcott | added zap method to classify.seqs and changed bayesian... |
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| 2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
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| 2012-09-11 |
Sarah Westcott | added count file to get.groups and remove.groups. added... |
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| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
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| 2012-06-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-06-04 |
Sarah Westcott | fixed classify.seqs output file name - had issue if... |
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| 2012-05-31 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-05-23 |
Sarah Westcott | added design and sets parameters to the rarefaction... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
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| 2012-03-13 |
Sarah Westcott | added unix to ifdefs. minor changes while testing 1... |
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| 2012-03-05 |
Sarah Westcott | fixed classify.seq error message when flip accnos file... |
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| 2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
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| 2012-01-19 |
westcott | fixed bug with shhh.flow from file path name in write... |
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| 2012-01-04 |
westcott | 1.23.0 |
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| 2011-10-18 |
westcott | 1.22.0 |
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| 2011-09-13 |
westcott | working on windows paralellization, added trimOligos... |
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| 2011-08-22 |
westcott | added multiple processors option for Windows users... |
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| 2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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| 2011-07-06 |
westcott | added save parameter to align.seqs, chimera commands... |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-05-10 |
westcott | added citation function to commands |
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| 2011-04-26 |
westcott | added current as option is lists of file names, process... |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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| 2011-01-07 |
westcott | working on chimera change to add trim feature, fixed... |
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| 2010-12-13 |
westcott | classify.seqs summary file fix |
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| 2010-12-03 |
westcott | fixed craig nelsons weighted bug and paralellized parsimony |
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| 2010-11-29 |
westcott | added consensus.seqs command |
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| 2010-11-05 |
westcott | cluster.split fix |
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| 2010-10-26 |
westcott | fixes while testing |
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| 2010-10-25 |
westcott | testing 1.14.0 |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-17 |
westcott | bug fixes |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-08-23 |
westcott | numSeqs passing fix |
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| 2010-08-19 |
westcott | changed how we break up the files on parallelized comma... |
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| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and... |
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| 2010-08-06 |
westcott | added versioning info to all shortcut files mothur... |
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| 2010-07-29 |
westcott | 1.12.1 |
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| 2010-07-28 |
westcott | some bug fixes |
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| 2010-07-19 |
westcott | added compile time default path |
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| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow... |
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| 2010-06-02 |
westcott | added classify.otu command |
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| 2010-06-01 |
westcott | latest version |
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| 2010-05-20 |
westcott | added cluster.split command |
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| 2010-05-10 |
westcott | fixed problem with class.fy.seqs where group totals... |
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| 2010-05-10 |
westcott | added make.group command |
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| 2010-05-10 |
westcott | worked on trim.seqs |
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| 2010-05-07 |
westcott | changed confidence scores calculation in bayesian |
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| 2010-05-07 |
westcott | changed groupfile in classify.seqs to reflect multiple... |
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| 2010-04-29 |
westcott | paralellized screen.seqs and added mpi code to it.... |
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| 2010-04-27 |
westcott | reworked the classifiers summary file added groupfile... |
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| 2010-04-26 |
westcott | made classifier faster |
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| 2010-04-20 |
westcott | a few modifications for 1.9 |
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| 2010-04-17 |
westcott | 1.9 |
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| 2010-04-14 |
westcott | some changes while testing 1.9 |
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| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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| 2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-01-27 |
westcott | fixed some bugs found while testing 1.8 |
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| 2010-01-27 |
westcott | added distance search method to classify.seqs |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2010-01-26 |
pschloss | pat's edits from 1/26/2010 |
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| 2010-01-19 |
pschloss | pat's mods to morisitahorn and pre.cluster |
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| 2010-01-19 |
westcott | added warning about average neighbor merges around... |
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| 2010-01-12 |
westcott | worked on hcluster. made .single command run using... |
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| 2010-01-05 |
westcott | you can now use a distance matrix as input for the... |
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| 2010-01-04 |
westcott | added pca command |
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| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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| 2009-12-02 |
westcott | modified sequence class to read fasta files with commen... |
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| 2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
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| 2009-11-17 |
westcott | final fixes for 1.7 |
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| 2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
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| 2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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projects / mothur.git / history