| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed... |
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| 2013-01-04 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2013-01-03 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-03 |
Pat Schloss | Changes to seq.error so that an alignment is not necessary |
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| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename... |
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| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-03-13 |
Sarah Westcott | added unix to ifdefs. minor changes while testing 1... |
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| 2012-02-03 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-02-03 |
John Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-02-03 |
John Westcott | test of commit push pull |
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| 2012-02-01 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-01-30 |
John Westcott | test on laptop setup |
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| 2012-01-30 |
Sarah Westcott | test |
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| 2012-01-30 |
Sarah Westcott | added test comment |
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| 2012-01-04 |
westcott | 1.23.0 |
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| 2011-09-13 |
westcott | working on windows paralellization, added trimOligos... |
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| 2011-08-22 |
westcott | added multiple processors option for Windows users... |
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| 2011-08-09 |
westcott | added count.groups command and paralellized align.seqs... |
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| 2011-08-09 |
westcott | added count.groups command and paralellized align.seqs... |
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| 2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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| 2011-07-06 |
westcott | added save parameter to align.seqs, chimera commands... |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-05-10 |
westcott | added citation function to commands |
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| 2011-04-26 |
westcott | added current as option is lists of file names, process... |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-03-15 |
westcott | adding current file class |
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| 2011-03-15 |
westcott | adding current file class |
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| 2011-03-11 |
westcott | sped up align.seqs appending of files |
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| 2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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| 2011-02-04 |
westcott | working on kendall |
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| 2011-01-07 |
westcott | working on chimera change to add trim feature, fixed... |
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| 2010-12-20 |
pschloss | pat's changes to seq.error command |
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| 2010-11-05 |
westcott | cluster.split fix |
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| 2010-10-26 |
westcott | fixes while testing |
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| 2010-10-25 |
westcott | testing 1.14.0 |
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| 2010-10-20 |
westcott | added pairwise.seqs |
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| 2010-10-19 |
westcott | fixed bug with aligner and longest base. added deunique... |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-20 |
westcott | changed how we name the make.group groups file, and... |
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| 2010-09-17 |
westcott | bug fixes |
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| 2010-08-27 |
westcott | fixed phylo.diversity |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-08-23 |
westcott | filter.seqs bug change |
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| 2010-08-23 |
westcott | numSeqs passing fix |
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| 2010-08-19 |
westcott | changed how we break up the files on parallelized comma... |
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| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and... |
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| 2010-07-28 |
westcott | some bug fixes |
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| 2010-07-19 |
westcott | added compile time default path |
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| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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| 2010-06-21 |
westcott | modified chimera commands to process multiple fasta... |
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| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow... |
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| 2010-06-10 |
westcott | committing so I can work on the other machine |
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| 2010-05-20 |
westcott | added cluster.split command |
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| 2010-04-29 |
westcott | paralellized screen.seqs and added mpi code to it.... |
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| 2010-04-20 |
westcott | a few modifications for 1.9 |
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| 2010-04-17 |
westcott | 1.9 |
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| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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| 2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
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| 2010-03-01 |
westcott | adding mothurout.h and .cpp to repo |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-02-12 |
westcott | working on chimeras |
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| 2010-02-04 |
pschloss | pat's ../ bug fix |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2010-01-12 |
westcott | worked on hcluster. made .single command run using... |
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| 2010-01-04 |
westcott | added pca command |
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| 2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
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| 2009-12-02 |
westcott | modified sequence class to read fasta files with commen... |
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| 2009-11-17 |
westcott | final fixes for 1.7 |
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| 2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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| 2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
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| 2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
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| 2009-07-20 |
westcott | fixed bugs in venn and aligner |
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| 2009-07-09 |
westcott | added getline function to mothur and modified places... |
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| 2009-07-08 |
westcott | added list.seqs command |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-21 |
pschloss | This is v.1.4.0 |
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| 2009-06-18 |
westcott | fixed some bugs |
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| 2009-06-18 |
pschloss | added an alignreport option to screen seqs |
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| 2009-06-16 |
pschloss | a few minor things - pds |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
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| 2009-06-04 |
pschloss | pat's edits of screen.seqs and summary.seqs |
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| 2009-05-22 |
westcott | changed defaults in allign.seqs command |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-18 |
westcott | added alignment code |
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projects / mothur.git / history