From: kdiverson <kd.iverson@gmail.com>
Date: Mon, 2 Jul 2012 14:12:41 +0000 (-0400)
Subject: fixed io
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=d71a31a60542608595ce1278cc4a3398479cec7f

fixed io
---

diff --git a/kruskalwalliscommand.cpp b/kruskalwalliscommand.cpp
index de15a8b..39afca8 100644
--- a/kruskalwalliscommand.cpp
+++ b/kruskalwalliscommand.cpp
@@ -141,7 +141,7 @@ int KruskalWallisCommand::execute(){
         
         //math goes here
         
-        int N = lookUp.size();
+        int N = lookup.size();
         double H;
         double tmp = 0.0;
         vector<groupRank> vec;
diff --git a/kruskalwalliscommand.h b/kruskalwalliscommand.h
index e3bf100..0fa8b68 100644
--- a/kruskalwalliscommand.h
+++ b/kruskalwalliscommand.h
@@ -9,6 +9,8 @@
 #define	KRUSKALWALLISCOMMAND_H
 
 #include "command.hpp"
+#include "inputdata.h"
+#include "sharedrabundvector.h"
 
 
 class KruskalWallisCommand : public Command {
@@ -39,8 +41,10 @@ public:
     
     
 private:
-    string outputDir;
+    string outputDir, sharedfile;
     bool abort;
+    set<string> labels;
+    vector<string> outputNames;
     vector<int> counts;
     vector<double> rankSums;
     vector<double> rankMeans;