From: kdiverson <>
Date: Wed, 11 Sep 2013 15:28:17 +0000 (-0400)
Subject: adding pretty confusion matrix
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=3914b0d6480f67df53b1e838f51c4e6155710434

adding pretty confusion matrix
---

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 482a3eb..c79e0e8 100755
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,10 +375,10 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
-        //randomForest.printConfusionMatrix(intToTreatmentMap);
+        randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
-        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + ".RF.";
+        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + "RF.";
         variables["[distance]"] = lookup[0]->getLabel();
         string filename = getOutputFileName("summary", variables);
         outputNames.push_back(filename); outputTypes["summary"].push_back(filename);