From: Sarah Westcott <mothur.westcott@gmail.com>
Date: Tue, 27 Mar 2012 17:29:29 +0000 (-0400)
Subject: initialized numLinkers and numSpacers in trim.seqs and trim.flows
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=36cea83f926066127bf856e7eae1a70ce7e796d0

initialized numLinkers and numSpacers in trim.seqs and trim.flows
---

diff --git a/trimflowscommand.cpp b/trimflowscommand.cpp
index f2d592a..346902c 100644
--- a/trimflowscommand.cpp
+++ b/trimflowscommand.cpp
@@ -207,6 +207,8 @@ TrimFlowsCommand::TrimFlowsCommand(string option)  {
 
 			numFPrimers = 0;
 			numRPrimers = 0;
+            numLinkers = 0;
+            numSpacers = 0;
 		}
 		
 	}
diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 5d4eb39..f00743c 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -329,6 +329,8 @@ int TrimSeqsCommand::execute(){
 		
 		numFPrimers = 0;  //this needs to be initialized
 		numRPrimers = 0;
+        numSpacers = 0;
+        numLinkers = 0;
 		createGroup = false;
 		vector<vector<string> > fastaFileNames;
 		vector<vector<string> > qualFileNames;