From: kdiverson <kd.iverson@gmail.com>
Date: Wed, 11 Sep 2013 04:48:45 +0000 (-0400)
Subject: adding code for confusion matrix
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=3503ee51ce297cd232ee0a98ace045358a2dc10f

adding code for confusion matrix
---

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 6191462..482a3eb 100755
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,6 +375,7 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
+        //randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
         variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + ".RF.";