From: pschloss <pschloss>
Date: Mon, 13 Jun 2011 14:23:44 +0000 (+0000)
Subject: removed some testing changes i made to classify.seqs
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=23e60689fa4306234b3d05b116f25d198316d1ae

removed some testing changes i made to classify.seqs
---

diff --git a/bayesian.cpp b/bayesian.cpp
index f715787..cf55d5c 100644
--- a/bayesian.cpp
+++ b/bayesian.cpp
@@ -247,7 +247,7 @@ string Bayesian::getTaxonomy(Sequence* seq) {
 		//bootstrap - to set confidenceScore
 		int numToSelect = queryKmers.size() / 8;
 	
-//		tax = bootstrapResults(queryKmers, index, numToSelect);
+		tax = bootstrapResults(queryKmers, index, numToSelect);
 				
 		return tax;	
 	}
@@ -349,7 +349,7 @@ int Bayesian::getMostProbableTaxonomy(vector<int> queryKmer) {
 		//find taxonomy with highest probability that this sequence is from it
 		
 		
-		cout << genusNodes.size() << endl;
+//		cout << genusNodes.size() << endl;
 		
 		
 		for (int k = 0; k < genusNodes.size(); k++) {
@@ -360,7 +360,7 @@ int Bayesian::getMostProbableTaxonomy(vector<int> queryKmer) {
 				prob += wordGenusProb[queryKmer[i]][k];
 			}
 			
-			cout << phyloTree->get(genusNodes[k]).name << '\t' << prob << endl;
+//			cout << phyloTree->get(genusNodes[k]).name << '\t' << prob << endl;
 
 			//is this the taxonomy with the greatest probability?
 			if (prob > maxProbability) {