From: Pat Schloss Date: Thu, 3 Jan 2013 14:21:44 +0000 (-0500) Subject: test X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=2285ad2c9b4c4e32bc68eb14b3c6c0a7ab4e899b test --- diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 0c8c2dd..99893a9 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -9,6 +9,7 @@ /* Begin PBXBuildFile section */ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; + 7E16B6F51695CB5C00C0DC4F /* main.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E16B6F41695CB5C00C0DC4F /* main.cpp */; }; 7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; }; 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */; }; 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */; }; @@ -385,6 +386,8 @@ 219C1DE11552C508004209F9 /* newcommandtemplate.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = newcommandtemplate.h; sourceTree = ""; }; 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcoremicrobiomecommand.cpp; sourceTree = ""; }; 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcoremicrobiomecommand.h; sourceTree = ""; }; + 7E16B6F31695CB5C00C0DC4F /* pdsMakeContigs.1 */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text.man; name = pdsMakeContigs.1; path = pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1; sourceTree = ""; }; + 7E16B6F41695CB5C00C0DC4F /* main.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = main.cpp; path = pdsMakeContigs/pdsMakeContigs/main.cpp; sourceTree = ""; }; 7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = refchimeratest.h; sourceTree = ""; }; 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = refchimeratest.cpp; sourceTree = ""; }; 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdistignorens.h; sourceTree = ""; }; @@ -1187,6 +1190,8 @@ A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */, 7E6BE10812F710D8007ADDBE /* refchimeratest.h */, 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */, + 7E16B6F31695CB5C00C0DC4F /* pdsMakeContigs.1 */, + 7E16B6F41695CB5C00C0DC4F /* main.cpp */, A77410F514697C300098E6AC /* seqnoise.h */, A77410F414697C300098E6AC /* seqnoise.cpp */, A7E9BA5312D39A5E00DA6239 /* read */, @@ -2304,6 +2309,7 @@ 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */, 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */, A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */, + 7E16B6F51695CB5C00C0DC4F /* main.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; diff --git a/pdsMakeContigs/pdsMakeContigs/main.cpp b/pdsMakeContigs/pdsMakeContigs/main.cpp new file mode 100644 index 0000000..f467955 --- /dev/null +++ b/pdsMakeContigs/pdsMakeContigs/main.cpp @@ -0,0 +1,18 @@ +// +// main.cpp +// pdsMakeContigs +// +// Created by Patrick Schloss on 1/2/13. +// Copyright (c) 2013 University of Michigan. All rights reserved. +// + +#include + +int main (int argc, const char * argv[]) +{ + + // insert code here... + std::cout << "Hello, World!\n"; + return 0; +} + diff --git a/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1 b/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1 new file mode 100644 index 0000000..d07499e --- /dev/null +++ b/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1 @@ -0,0 +1,79 @@ +.\"Modified from man(1) of FreeBSD, the NetBSD mdoc.template, and mdoc.samples. +.\"See Also: +.\"man mdoc.samples for a complete listing of options +.\"man mdoc for the short list of editing options +.\"/usr/share/misc/mdoc.template +.Dd 1/2/13 \" DATE +.Dt pdsMakeContigs 1 \" Program name and manual section number +.Os Darwin +.Sh NAME \" Section Header - required - don't modify +.Nm pdsMakeContigs, +.\" The following lines are read in generating the apropos(man -k) database. Use only key +.\" words here as the database is built based on the words here and in the .ND line. +.Nm Other_name_for_same_program(), +.Nm Yet another name for the same program. +.\" Use .Nm macro to designate other names for the documented program. +.Nd This line parsed for whatis database. +.Sh SYNOPSIS \" Section Header - required - don't modify +.Nm +.Op Fl abcd \" [-abcd] +.Op Fl a Ar path \" [-a path] +.Op Ar file \" [file] +.Op Ar \" [file ...] +.Ar arg0 \" Underlined argument - use .Ar anywhere to underline +arg2 ... \" Arguments +.Sh DESCRIPTION \" Section Header - required - don't modify +Use the .Nm macro to refer to your program throughout the man page like such: +.Nm +Underlining is accomplished with the .Ar macro like this: +.Ar underlined text . +.Pp \" Inserts a space +A list of items with descriptions: +.Bl -tag -width -indent \" Begins a tagged list +.It item a \" Each item preceded by .It macro +Description of item a +.It item b +Description of item b +.El \" Ends the list +.Pp +A list of flags and their descriptions: +.Bl -tag -width -indent \" Differs from above in tag removed +.It Fl a \"-a flag as a list item +Description of -a flag +.It Fl b +Description of -b flag +.El \" Ends the list +.Pp +.\" .Sh ENVIRONMENT \" May not be needed +.\" .Bl -tag -width "ENV_VAR_1" -indent \" ENV_VAR_1 is width of the string ENV_VAR_1 +.\" .It Ev ENV_VAR_1 +.\" Description of ENV_VAR_1 +.\" .It Ev ENV_VAR_2 +.\" Description of ENV_VAR_2 +.\" .El +.Sh FILES \" File used or created by the topic of the man page +.Bl -tag -width "/Users/joeuser/Library/really_long_file_name" -compact +.It Pa /usr/share/file_name +FILE_1 description +.It Pa /Users/joeuser/Library/really_long_file_name +FILE_2 description +.El \" Ends the list +.\" .Sh DIAGNOSTICS \" May not be needed +.\" .Bl -diag +.\" .It Diagnostic Tag +.\" Diagnostic informtion here. +.\" .It Diagnostic Tag +.\" Diagnostic informtion here. +.\" .El +.Sh SEE ALSO +.\" List links in ascending order by section, alphabetically within a section. +.\" Please do not reference files that do not exist without filing a bug report +.Xr a 1 , +.Xr b 1 , +.Xr c 1 , +.Xr a 2 , +.Xr b 2 , +.Xr a 3 , +.Xr b 3 +.\" .Sh BUGS \" Document known, unremedied bugs +.\" .Sh HISTORY \" Document history if command behaves in a unique manner \ No newline at end of file