X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=validcalculator.cpp;h=7df7c4e28d65cb2f7853500728075e8edc161723;hp=d3a641f0b9c37286d241f126e01d708a144569c6;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=75c5a235ac3eb22e0f97d36874f4b2dcf9591f2e diff --git a/validcalculator.cpp b/validcalculator.cpp index d3a641f..7df7c4e 100644 --- a/validcalculator.cpp +++ b/validcalculator.cpp @@ -8,36 +8,214 @@ */ #include "validcalculator.h" +#include "ace.h" +#include "sobs.h" +#include "nseqs.h" +#include "chao1.h" +#include "bootstrap.h" +#include "simpson.h" +#include "simpsoneven.h" +#include "invsimpson.h" +#include "npshannon.h" +#include "shannon.h" +#include "smithwilson.h" +#include "heip.h" +#include "shannoneven.h" +#include "jackknife.h" +#include "geom.h" +#include "qstat.h" +#include "logsd.h" +#include "bergerparker.h" +#include "bstick.h" +#include "goodscoverage.h" +#include "efron.h" +#include "boneh.h" +#include "solow.h" +#include "shen.h" +#include "coverage.h" +#include "sharedsobscollectsummary.h" +#include "sharedchao1.h" +#include "sharedace.h" +#include "sharedjabund.h" +#include "sharedsorabund.h" +#include "sharedjclass.h" +#include "sharedsorclass.h" +#include "sharedjest.h" +#include "sharedsorest.h" +#include "sharedthetayc.h" +#include "sharedthetan.h" +#include "sharedkstest.h" +#include "whittaker.h" +#include "sharednseqs.h" +#include "sharedochiai.h" +#include "sharedanderbergs.h" +#include "sharedkulczynski.h" +#include "sharedkulczynskicody.h" +#include "sharedlennon.h" +#include "sharedmorisitahorn.h" +#include "sharedbraycurtis.h" +#include "sharedjackknife.h" +#include "whittaker.h" +#include "odum.h" +#include "canberra.h" +#include "structeuclidean.h" +#include "structchord.h" +#include "hellinger.h" +#include "manhattan.h" +#include "structpearson.h" +#include "soergel.h" +#include "spearman.h" +#include "structkulczynski.h" +#include "structchi2.h" +#include "speciesprofile.h" +#include "hamming.h" +#include "gower.h" +#include "memchi2.h" +#include "memchord.h" +#include "memeuclidean.h" +#include "mempearson.h" +#include "sharedsobs.h" +#include "sharednseqs.h" + /********************************************************************/ ValidCalculators::ValidCalculators() { try { - m = MothurOut::getInstance(); + m = MothurOut::getInstance(); + + initialSingle(); + initialShared(); + initialRarefaction(); + initialSharedRarefact(); + initialSummary(); + initialSharedSummary(); + initialVennSingle(); + initialVennShared(); + initialTreeGroups(); + initialBoot(); + initialDistance(); + initialMatrix(); + initialHeat(); + + for(it = single.begin(); it != single.end(); it++) { allCalcs.insert(it->first); } + for(it = shared.begin(); it != shared.end(); it++) { allCalcs.insert(it->first); } + for(it = rarefaction.begin(); it != rarefaction.end(); it++) { allCalcs.insert(it->first); } + for(it = summary.begin(); it != summary.end(); it++) { allCalcs.insert(it->first); } + for(it = sharedrarefaction.begin(); it != sharedrarefaction.end(); it++) { allCalcs.insert(it->first); } + for(it = sharedsummary.begin(); it != sharedsummary.end(); it++) { allCalcs.insert(it->first); } + for(it = vennsingle.begin(); it != vennsingle.end(); it++) { allCalcs.insert(it->first); } + for(it = vennshared.begin(); it != vennshared.end(); it++) { allCalcs.insert(it->first); } + for(it = treegroup.begin(); it != treegroup.end(); it++) { allCalcs.insert(it->first); } + for(it = matrix.begin(); it != matrix.end(); it++) { allCalcs.insert(it->first); } + for(it = heat.begin(); it != heat.end(); it++) { allCalcs.insert(it->first); } + for(it = boot.begin(); it != boot.end(); it++) { allCalcs.insert(it->first); } + for(it = distance.begin(); it != distance.end(); it++) { allCalcs.insert(it->first); } - initialSingle(); - initialShared(); - initialRarefaction(); - initialSharedRarefact(); - initialSummary(); - initialSharedSummary(); - initialVennSingle(); - initialVennShared(); - initialTreeGroups(); - initialBoot(); - initialDistance(); - initialMatrix(); - initialHeat(); } catch(exception& e) { m->errorOut(e, "ValidCalculator", "ValidCalculator"); exit(1); } } - /********************************************************************/ - ValidCalculators::~ValidCalculators() {} - +/********************************************************************/ +void ValidCalculators::printCitations(vector Estimators) { + try { + + for (int i = 0; i < Estimators.size(); i++) { + //is this citation, do nothing + if ((Estimators[i] == "citation") || (Estimators[i] == "default") || (Estimators[i] == "eachgap") || (Estimators[i] == "nogaps") || (Estimators[i] == "onegap")) {} + //is this a valid calculator + else if (allCalcs.count(Estimators[i]) != 0) { + if (Estimators[i] == "sobs") { Calculator* temp = new Sobs(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "chao") { Calculator* temp = new Chao1(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "nseqs") { Calculator* temp = new NSeqs(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "coverage") { Calculator* temp = new Coverage(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "ace") { Calculator* temp = new Ace(10); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "jack") { Calculator* temp = new Jackknife(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "shannon") { Calculator* temp = new Shannon(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "shannoneven") { Calculator* temp = new ShannonEven(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "npshannon") { Calculator* temp = new NPShannon(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "heip") { Calculator* temp = new Heip(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "smithwilson") { Calculator* temp = new SmithWilson(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "simpson") { Calculator* temp = new Simpson(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "simpsoneven") { Calculator* temp = new SimpsonEven(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "invsimpson") { Calculator* temp = new InvSimpson(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "bootstrap") { Calculator* temp = new Bootstrap(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "geometric") { Calculator* temp = new Geom(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "qstat") { Calculator* temp = new QStat(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "logseries") { Calculator* temp = new LogSD(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "bergerparker") { Calculator* temp = new BergerParker(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "bstick") { Calculator* temp = new BStick(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "goodscoverage") { Calculator* temp = new GoodsCoverage(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "efron") { Calculator* temp = new Efron(10); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "boneh") { Calculator* temp = new Boneh(10); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "solow") { Calculator* temp = new Solow(10); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "shen") { Calculator* temp = new Shen(10, 10); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "sharedchao") { Calculator* temp = new SharedChao1(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sharedsobs") { Calculator* temp = new SharedSobsCS(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sharedace") { Calculator* temp = new SharedAce(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "jabund") { Calculator* temp = new JAbund(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sorabund") { Calculator* temp = new SorAbund(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "jclass") { Calculator* temp = new Jclass(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sorclass") { Calculator* temp = new SorClass(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "jest") { Calculator* temp = new Jest(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sorest") { Calculator* temp = new SorEst(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "thetayc") { Calculator* temp = new ThetaYC(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "thetan") { Calculator* temp = new ThetaN(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "kstest") { Calculator* temp = new KSTest(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "whittaker") { Calculator* temp = new Whittaker(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sharednseqs") { Calculator* temp = new SharedNSeqs(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "ochiai") { Calculator* temp = new Ochiai(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "anderberg") { Calculator* temp = new Anderberg(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "kulczynski") { Calculator* temp = new Kulczynski(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "kulczynskicody") { Calculator* temp = new KulczynskiCody(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "lennon") { Calculator* temp = new Lennon(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "morisitahorn") { Calculator* temp = new MorHorn(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "braycurtis") { Calculator* temp = new BrayCurtis(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "odum") { Calculator* temp = new Odum(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "canberra") { Calculator* temp = new Canberra(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "structeuclidean") { Calculator* temp = new StructEuclidean(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "structchord") { Calculator* temp = new StructChord(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "hellinger") { Calculator* temp = new Hellinger(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "manhattan") { Calculator* temp = new Manhattan(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "structpearson") { Calculator* temp = new StructPearson(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "soergel") { Calculator* temp = new Soergel(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "spearman") { Calculator* temp = new Spearman(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "structkulczynski") { Calculator* temp = new StructKulczynski(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "speciesprofile") { Calculator* temp = new SpeciesProfile(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "hamming") { Calculator* temp = new Hamming(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "structchi2") { Calculator* temp = new StructChi2(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "gower") { Calculator* temp = new Gower(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + + }else if (Estimators[i] == "memchi2") { Calculator* temp = new MemChi2(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "memchord") { Calculator* temp = new MemChord(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "memeuclidean") { Calculator* temp = new MemEuclidean(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "mempearson") { Calculator* temp = new MemPearson(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "sharedobserved") { Calculator* temp = new SharedSobs(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else if (Estimators[i] == "kulczynski") { Calculator* temp = new Kulczynski(); m->mothurOut(temp->getName() + ": "); temp->citation(); delete temp; + }else { m->mothurOut("[ERROR]: Missing else if for " + Estimators[i] + " in printCitations."); m->mothurOutEndLine(); } + }else { m->mothurOut(Estimators[i] + " is not a valid calculator, no citation will be given."); m->mothurOutEndLine(); } + } + + } + catch(exception& e) { + m->errorOut(e, "ValidCalculator", "printCitations"); + exit(1); + } +} /********************************************************************/ bool ValidCalculators::isValidCalculator(string parameter, string calculator) { @@ -262,16 +440,22 @@ void ValidCalculators::initialShared() { shared["braycurtis"] = "braycurtis"; shared["odum"] = "odum"; shared["canberra"] = "canberra"; - shared["stricteuclidean"] = "stricteuclidean"; - shared["strictchord"] = "strictchord"; + shared["structeuclidean"] = "structeuclidean"; + shared["structchord"] = "structchord"; shared["hellinger"] = "hellinger"; shared["manhattan"] = "manhattan"; - shared["strictpearson"] = "strictpearson"; + shared["structpearson"] = "structpearson"; shared["soergel"] = "soergel"; shared["spearman"] = "spearman"; - shared["strictkulczynski"] = "strictkulczynski"; + shared["structkulczynski"] = "structkulczynski"; + shared["structchi2"] = "structchi2"; shared["speciesprofile"] = "speciesprofile"; shared["hamming"] = "hamming"; + shared["gower"] = "gower"; + shared["memchi2"] = "memchi2"; + shared["memchord"] = "memchord"; + shared["memeuclidean"] = "memeuclidean"; + shared["mempearson"] = "mempearson"; shared["default"] = "default"; } catch(exception& e) { @@ -369,16 +553,22 @@ void ValidCalculators::initialSharedSummary() { sharedsummary["braycurtis"] = "braycurtis"; sharedsummary["odum"] = "odum"; sharedsummary["canberra"] = "canberra"; - sharedsummary["stricteuclidean"] = "stricteuclidean"; - sharedsummary["strictchord"] = "strictchord"; + sharedsummary["structeuclidean"] = "structeuclidean"; + sharedsummary["structchord"] = "structchord"; sharedsummary["hellinger"] = "hellinger"; sharedsummary["manhattan"] = "manhattan"; - sharedsummary["strictpearson"] = "strictpearson"; - sharedsummary["strictkulczynski"] = "strictkulczynski"; + sharedsummary["structpearson"] = "structpearson"; + sharedsummary["structkulczynski"] = "structkulczynski"; + sharedsummary["structchi2"] = "structchi2"; sharedsummary["soergel"] = "soergel"; sharedsummary["spearman"] = "spearman"; sharedsummary["speciesprofile"] = "speciesprofile"; sharedsummary["hamming"] = "hamming"; + sharedsummary["gower"] = "gower"; + sharedsummary["memchi2"] = "memchi2"; + sharedsummary["memchord"] = "memchord"; + sharedsummary["memeuclidean"] = "memeuclidean"; + sharedsummary["mempearson"] = "mempearson"; sharedsummary["default"] = "default"; } catch(exception& e) { @@ -435,6 +625,9 @@ void ValidCalculators::initialVennShared() { /********************************************************************/ void ValidCalculators::initialTreeGroups() { try { + treegroup["sharedsobs"] = "sharedsobs"; + treegroup["sharedchao"] = "sharedchao"; + treegroup["sharedace"] = "sharedace"; treegroup["jabund"] = "jabund"; treegroup["sorabund"] = "sorabund"; treegroup["jclass"] = "jclass"; @@ -443,8 +636,35 @@ void ValidCalculators::initialTreeGroups() { treegroup["sorest"] = "sorest"; treegroup["thetayc"] = "thetayc"; treegroup["thetan"] = "thetan"; + treegroup["kstest"] = "kstest"; + treegroup["whittaker"] = "whittaker"; + treegroup["sharednseqs"] = "sharednseqs"; + treegroup["ochiai"] = "ochiai"; + treegroup["anderberg"] = "anderberg"; + treegroup["kulczynski"] = "kulczynski"; + treegroup["kulczynskicody"] = "kulczynskicody"; + treegroup["lennon"] = "lennon"; treegroup["morisitahorn"] = "morisitahorn"; treegroup["braycurtis"] = "braycurtis"; + treegroup["odum"] = "odum"; + treegroup["canberra"] = "canberra"; + treegroup["structeuclidean"] = "structeuclidean"; + treegroup["structchord"] = "structchord"; + treegroup["hellinger"] = "hellinger"; + treegroup["manhattan"] = "manhattan"; + treegroup["structpearson"] = "structpearson"; + treegroup["structkulczynski"] = "structkulczynski"; + treegroup["structchi2"] = "structchi2"; + treegroup["soergel"] = "soergel"; + treegroup["spearman"] = "spearman"; + treegroup["speciesprofile"] = "speciesprofile"; + treegroup["hamming"] = "hamming"; + treegroup["gower"] = "gower"; + treegroup["memchi2"] = "memchi2"; + treegroup["memchord"] = "memchord"; + treegroup["memeuclidean"] = "memeuclidean"; + treegroup["mempearson"] = "mempearson"; + } catch(exception& e) { m->errorOut(e, "ValidCalculator", "initialTreeGroups"); @@ -474,16 +694,46 @@ void ValidCalculators::initialHeat() { /********************************************************************/ void ValidCalculators::initialMatrix() { try { - matrix["jabund"] = "jabund"; + matrix["sharedsobs"] = "sharedsobs"; + matrix["sharedchao"] = "sharedchao"; + matrix["sharedace"] = "sharedace"; + matrix["jabund"] = "jabund"; matrix["sorabund"] = "sorabund"; - matrix["jclass"] = "jclass"; + matrix["jclass"] = "jclass"; matrix["sorclass"] = "sorclass"; matrix["jest"] = "jest"; - matrix["sorest"] = "sorest"; + matrix["sorest"] = "sorest"; matrix["thetayc"] = "thetayc"; - matrix["thetan"] = "thetan"; + matrix["thetan"] = "thetan"; + matrix["kstest"] = "kstest"; + matrix["whittaker"] = "whittaker"; + matrix["sharednseqs"] = "sharednseqs"; + matrix["ochiai"] = "ochiai"; + matrix["anderberg"] = "anderberg"; + matrix["kulczynski"] = "kulczynski"; + matrix["kulczynskicody"] = "kulczynskicody"; + matrix["lennon"] = "lennon"; matrix["morisitahorn"] = "morisitahorn"; - matrix["braycurtis"] = "braycurtis"; + matrix["braycurtis"] = "braycurtis"; + matrix["odum"] = "odum"; + matrix["canberra"] = "canberra"; + matrix["structeuclidean"] = "structeuclidean"; + matrix["structchord"] = "structchord"; + matrix["hellinger"] = "hellinger"; + matrix["manhattan"] = "manhattan"; + matrix["structpearson"] = "structpearson"; + matrix["structkulczynski"] = "structkulczynski"; + matrix["structchi2"] = "structchi2"; + matrix["soergel"] = "soergel"; + matrix["spearman"] = "spearman"; + matrix["speciesprofile"] = "speciesprofile"; + matrix["hamming"] = "hamming"; + matrix["gower"] = "gower"; + matrix["memchi2"] = "memchi2"; + matrix["memchord"] = "memchord"; + matrix["memeuclidean"] = "memeuclidean"; + matrix["mempearson"] = "mempearson"; + } catch(exception& e) { m->errorOut(e, "ValidCalculator", "initialMatrix"); @@ -594,4 +844,79 @@ void ValidCalculators::printCalc(string parameter, ostream& out) { } } /********************************************************************/ +string ValidCalculators::printCalc(string parameter) { + try{ + string output = "The available estimators for calc are "; + //are you looking for a calculator for a single parameter + if (parameter == "single") { + for (it = single.begin(); it != single.end(); it++) { + output += it->first + ", "; + } + //are you looking for a calculator for a shared parameter + }else if (parameter == "shared") { + for (it = shared.begin(); it != shared.end(); it++) { + output += it->first + ", "; + } + //are you looking for a calculator for a rarefaction parameter + }else if (parameter == "rarefaction") { + for (it = rarefaction.begin(); it != rarefaction.end(); it++) { + output += it->first + ", "; + } + //are you looking for a calculator for a summary parameter + }else if (parameter == "summary") { + for (it = summary.begin(); it != summary.end(); it++) { + output += it->first + ", "; + } + //are you looking for a calculator for a sharedsummary parameter + }else if (parameter == "sharedsummary") { + for (it = sharedsummary.begin(); it != sharedsummary.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "sharedrarefaction") { + for (it = sharedrarefaction.begin(); it != sharedrarefaction.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "vennsingle") { + for (it = vennsingle.begin(); it != vennsingle.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "vennshared") { + for (it = vennshared.begin(); it != vennshared.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "treegroup") { + for (it = treegroup.begin(); it != treegroup.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "matrix") { + for (it = matrix.begin(); it != matrix.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "heat") { + for (it = heat.begin(); it != heat.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "boot") { + for (it = boot.begin(); it != boot.end(); it++) { + output += it->first + ", "; + } + }else if (parameter == "distance") { + for (it = distance.begin(); it != distance.end(); it++) { + output += it->first + ", "; + } + } + + //rip off comma + output = output.substr(0, output.length()-1); + output += "\n"; + + return output; + } + catch(exception& e) { + m->errorOut(e, "ValidCalculator", "printCalc"); + exit(1); + } +} +/********************************************************************/ +