X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=trimseqscommand.cpp;h=af3bfc8fcbf5ee10cb1a50b192ff414063bd740e;hp=cbf5e13603ced805d185196fad9129eacb573d22;hb=956cdff34f2d609a7736838b1631cd7957580b8b;hpb=37309a2552995e5f7f2e04be99b808c803472311

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index cbf5e13..af3bfc8 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -519,7 +519,7 @@ int TrimSeqsCommand::setLines(string filename, vector<linePair*>& lines) {
 		
 		lines.clear();
 		
-		vector<long int> positions;
+		vector<unsigned long int> positions;
 		
 		ifstream inFASTA;
 		openInputFile(filename, inFASTA);
@@ -529,7 +529,7 @@ int TrimSeqsCommand::setLines(string filename, vector<linePair*>& lines) {
 			input = getline(inFASTA);
 
 			if (input.length() != 0) {
-				if(input[0] == '>'){ long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);	}
+				if(input[0] == '>'){ unsigned long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);	}
 			}
 		}
 		inFASTA.close();
@@ -537,7 +537,7 @@ int TrimSeqsCommand::setLines(string filename, vector<linePair*>& lines) {
 		int numFastaSeqs = positions.size();
 	
 		FILE * pFile;
-		long size;
+		unsigned long int size;
 		
 		//get num bytes in file
 		pFile = fopen (filename.c_str(),"rb");
@@ -552,11 +552,11 @@ int TrimSeqsCommand::setLines(string filename, vector<linePair*>& lines) {
 		
 		for (int i = 0; i < processors; i++) {
 
-			long int startPos = positions[ i * numSeqsPerProcessor ];
+			unsigned long int startPos = positions[ i * numSeqsPerProcessor ];
 			if(i == processors - 1){
 				numSeqsPerProcessor = numFastaSeqs - i * numSeqsPerProcessor;
 			}else{  
-				long int myEnd = positions[ (i+1) * numSeqsPerProcessor ];
+				unsigned long int myEnd = positions[ (i+1) * numSeqsPerProcessor ];
 			}
 			lines.push_back(new linePair(startPos, numSeqsPerProcessor));
 		}