X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=treenode.cpp;h=0131f59c340ef30eeeeb56ed2a96fc2dc258b808;hp=ae7d0e4ec6731a78967a46004aed02e61ceaf984;hb=615301e57c25e241356a9c2380648d117709458d;hpb=d037597badc8d18e235c59f0c1114180edb7f98f

diff --git a/treenode.cpp b/treenode.cpp
index ae7d0e4..0131f59 100644
--- a/treenode.cpp
+++ b/treenode.cpp
@@ -12,21 +12,28 @@
 
 /****************************************************************/	
 Node::Node() {
+	m = MothurOut::getInstance();
 	//initialize node
 	name = "";
 	branchLength = -1;
 	parent = -1;
 	lchild = -1;
 	rchild = -1;
+	length2leaf = 0.0;
+	label = -1;
 	
 }
 /****************************************************************/
 void Node::setName(string Name) {  name = Name; }
 /****************************************************************/
-void Node::setGroup(string groups)  { group =groups; }
+void Node::setGroup(vector<string> groups)  { group =groups; }
 /****************************************************************/
 void Node::setBranchLength(float l) { branchLength = l; }
 /****************************************************************/
+void Node::setLabel(float l) { label = l; }
+/****************************************************************/
+void Node::setLengthToLeaves(float l) { length2leaf = l; }
+/****************************************************************/
 void Node::setParent(int p)  { parent = p; }
 /****************************************************************/
 void Node::setIndex(int i)  { vectorIndex = i; }
@@ -35,10 +42,14 @@ void Node::setChildren(int lc, int rc) { lchild = lc; rchild = rc; }	//leftchild
 /****************************************************************/
 string Node::getName() { return name; }
 /****************************************************************/
-string Node::getGroup() { return group; }
+vector<string> Node::getGroup() { return group; }
 /****************************************************************/
 float Node::getBranchLength() { return branchLength; }
 /****************************************************************/
+float Node::getLabel() { return label; }
+/****************************************************************/
+float Node::getLengthToLeaves() { return length2leaf; }
+/****************************************************************/
 int Node::getParent() { return parent; }
 /****************************************************************/
 int Node::getLChild() { return lchild; }
@@ -48,23 +59,33 @@ int Node::getRChild() { return rchild; }
 int Node::getIndex() { return vectorIndex; }
 /****************************************************************/
 //to be used by printTree in the Tree class to print the leaf info			
-void Node::printNode(ostream& out) {
+void Node::printNode() {
 	try{
-		out << name;
+		m->mothurOut(name + " " + toString(parent) + " " + toString(lchild) + " " + toString(rchild) + " ");
+		
+		/*for (int i = 0; i < group.size(); i++) {  m->mothurOut( group[i] + " "); }
 		
 		//there is a branch length
 		if (branchLength != -1) { 
-			out << ":" << setprecision(4) << branchLength; 
+			m->mothurOut(" " + toString(branchLength)); 
 		}
+		m->mothurOut(" |");
+		
+		map<string, int>::iterator it;
+		for(it=pGroups.begin();it!=pGroups.end();it++){
+			m->mothurOut(" " + it->first + ":" + toString(it->second));
+		}
+		m->mothurOut(" |");
+		for(it=pcount.begin();it!=pcount.end();it++){
+			m->mothurOut(" " + it->first + ":" + toString(it->second));
+		}*/
+		m->mothurOutEndLine();
+		
 		
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the Node class Function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "Node", "printNode");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the Node class function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}		
 }
 /****************************************************************/