X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=systemcommand.h;h=27adf7c5993289bc0edeeb9f56b8de5939b2bfb0;hp=3c22773f2d9e70417c6dc3fef6a58181a16440f0;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77

diff --git a/systemcommand.h b/systemcommand.h
index 3c22773..27adf7c 100644
--- a/systemcommand.h
+++ b/systemcommand.h
@@ -24,9 +24,11 @@ class SystemCommand : public Command {
 		vector<string> setParameters();
 		string getCommandName()			{ return "system";		}
 		string getCommandCategory()		{ return "General";		}
-		string getHelpString();	
+        string getHelpString();	
+        string getOutputPattern(string){ return ""; }	
 		string getCitation() { return "http://www.mothur.org/wiki/System"; }
-	
+		string getDescription()		{ return "execute system commands from within mothur"; }
+
 		int execute(); 
 		void help() { m->mothurOut(getHelpString()); }