X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=summarysharedcommand.cpp;h=2c9399bda1dd363d04c1fed89ff9b12ea8c3aace;hp=d93fb6e775392b5436b6dadbb99c88761e862de8;hb=ac03f1f6c27b5bfdf2cfb6d45c3667c3e0281f51;hpb=fe08eacea5a2d34cd4bd27e8451fd2872102a80a

diff --git a/summarysharedcommand.cpp b/summarysharedcommand.cpp
index d93fb6e..2c9399b 100644
--- a/summarysharedcommand.cpp
+++ b/summarysharedcommand.cpp
@@ -184,9 +184,6 @@ SummarySharedCommand::SummarySharedCommand(string option)  {
 			string temp = validParameter.validFile(parameters, "all", false);				if (temp == "not found") { temp = "false"; }
 			all = m->isTrue(temp);
 			
-			temp = validParameter.validFile(parameters, "distance", false);					if (temp == "not found") { temp = "false"; }
-			createPhylip = m->isTrue(temp);
-			
             temp = validParameter.validFile(parameters, "iters", false);			if (temp == "not found") { temp = "1000"; }
 			m->mothurConvert(temp, iters); 
             
@@ -204,6 +201,10 @@ SummarySharedCommand::SummarySharedCommand(string option)  {
             
             if (subsample == false) { iters = 0; }
             
+            temp = validParameter.validFile(parameters, "distance", false);					if (temp == "not found") { temp = "false"; }
+			createPhylip = m->isTrue(temp);
+            if (subsample) { createPhylip = true; }
+            
 			temp = validParameter.validFile(parameters, "processors", false);	if (temp == "not found"){	temp = m->getProcessors();	}
 			m->setProcessors(temp);
 			m->mothurConvert(temp, processors);