X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=summarycommand.h;h=d225109359d4950ad88be6a1ff41dd49cf062251;hp=7c7ee2c8eea829a9c6dc95fa794df5fcccc7bda1;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2

diff --git a/summarycommand.h b/summarycommand.h
index 7c7ee2c..d225109 100644
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -22,7 +22,12 @@ class SummaryCommand : public Command {
 
 public:
 	SummaryCommand(string);
+	SummaryCommand();
 	~SummaryCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -39,7 +44,8 @@ private:
 	set<string> labels; //holds labels to be used
 	string label, calc, outputDir;
 	vector<string>  Estimators;
-	vector<string> inputFileNames;
+	vector<string> inputFileNames, outputNames;
+	map<string, vector<string> > outputTypes;
 	vector<string> groups;
 	
 	vector<string> parseSharedFile(string);