X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=suffixtree.hpp;h=d2b69e42325777d508a23000b0bc0924e0cc34f9;hp=28b6fd10772f12c5c712705fb22b414a79b4cb32;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=74c78f9abd9e733f0c2f812efec97a76632fcbf8

diff --git a/suffixtree.hpp b/suffixtree.hpp
index 28b6fd1..d2b69e4 100644
--- a/suffixtree.hpp
+++ b/suffixtree.hpp
@@ -36,12 +36,12 @@ class SuffixTree {
 public:
 	SuffixTree();
 	~SuffixTree();
-//	SuffixTree(string, string);
 
-	void loadSequence(Sequence*);
+	void loadSequence(Sequence);
 	string getSeqName();
 	void print();	
 	int countSuffixes(string, int&);
+	int countSuffixes(string);	
 
 private:	
 	void addPrefix(int);
@@ -59,6 +59,7 @@ private:
 	int nodeCounter;
 	string seqName;
 	string sequence;
+	MothurOut* m;
 	
 };