X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=splitgroupscommand.h;h=ec22b8fedaec8752dd1b9161c6476b0223fc157e;hp=a9a6343084c0982b1be2c6a8688a60cb45804375;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77

diff --git a/splitgroupscommand.h b/splitgroupscommand.h
index a9a6343..ec22b8f 100644
--- a/splitgroupscommand.h
+++ b/splitgroupscommand.h
@@ -28,26 +28,27 @@ public:
 	~SplitGroupCommand() {}
 	
 	vector<string> setParameters();
-	string getCommandName()			{ return "split.group";				}
+	string getCommandName()			{ return "split.groups";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Split.group"; }
+	string getDescription()		{ return "split a name or fasta file by group"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
-	int readNames(); 
-	int splitFasta(); 
-	
 	vector<string> outputNames;
-	map<string, vector<string> > nameMap;
-	map<string, vector<string> >::iterator itNames;
-	GroupMap* groupMap;
-	
-	string outputDir, namefile, groupfile, groups, fastafile;
+		
+	string outputDir, namefile, groupfile, countfile, groups, fastafile;
 	vector<string> Groups;
 	bool abort;
+    
+    int runNameGroup();
+    int runCount();
 };
 
 /***************************************************************************************/