X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=splitgroupscommand.h;h=ec22b8fedaec8752dd1b9161c6476b0223fc157e;hp=a8dc9a19e656651be58416c99e802e1b98b72a56;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/splitgroupscommand.h b/splitgroupscommand.h
index a8dc9a1..ec22b8f 100644
--- a/splitgroupscommand.h
+++ b/splitgroupscommand.h
@@ -28,10 +28,11 @@ public:
 	~SplitGroupCommand() {}
 	
 	vector<string> setParameters();
-	string getCommandName()			{ return "split.group";				}
+	string getCommandName()			{ return "split.groups";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Split.group"; }
 	string getDescription()		{ return "split a name or fasta file by group"; }
 
@@ -42,9 +43,12 @@ public:
 private:
 	vector<string> outputNames;
 		
-	string outputDir, namefile, groupfile, groups, fastafile;
+	string outputDir, namefile, groupfile, countfile, groups, fastafile;
 	vector<string> Groups;
 	bool abort;
+    
+    int runNameGroup();
+    int runCount();
 };
 
 /***************************************************************************************/