X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=slayer.h;h=eeefc62392b64cdb0eb5797cba1c994b27058f50;hp=107b02785fffb395662508dc8875e49013103b47;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=8c1196586860f830fc9c813f2a79abab7434dc4b

diff --git a/slayer.h b/slayer.h
index 107b027..eeefc62 100644
--- a/slayer.h
+++ b/slayer.h
@@ -32,7 +32,7 @@ class Slayer {
 		Slayer(int, int, int, float, int, int, int);
 		~Slayer() {};
 		
-		string getResults(Sequence*, vector<Sequence*>);
+		string getResults(Sequence, vector<Sequence>);
 		vector<data_struct> getOutput()  {	return outputResults;			}
 		
 				
@@ -44,10 +44,10 @@ class Slayer {
 		vector< map<int, int> > baseSpots;
 		Sequence myQuery;
 		
-		map<int, int> verticalFilter(vector<Sequence*>);
+		map<int, int> verticalFilter(Sequence&, Sequence&, Sequence&);
 		float computePercentID(string, string, int, int);
 		
-		vector<data_struct> runBellerophon(Sequence*, Sequence*, Sequence*, map<int, int>&);
+		vector<data_struct> runBellerophon(Sequence, Sequence, Sequence, map<int, int>&);
 		vector<snps> getSNPS(string, string, string, int, int);
 		int bootstrapSNPS(vector<snps>, vector<snps>, float&, float&, int);
 		float snpQA(vector<snps>);