X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedsorest.cpp;h=b9ab0501bc5f8f7fa000b16b14f79bfad237b8cf;hp=91191d5e9ec85c7b8b1f918148c9a9dfba69fa44;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=e81e076cbba02b37cd338370aaa32acaf1407c29

diff --git a/sharedsorest.cpp b/sharedsorest.cpp
index 91191d5..b9ab050 100644
--- a/sharedsorest.cpp
+++ b/sharedsorest.cpp
@@ -38,7 +38,7 @@ EstOutput SorEst::getValues(vector<SharedRAbundVector*> shared) {
 		S1 = chaoS1->getValues(chaoS1Sabund);
 		S2 = chaoS2->getValues(chaoS2Sabund);
 		
-		data[0] = (2 * S12[0]) / (float)(S1[0] + S2[0]);
+		data[0] = 1.0-(2 * S12[0]) / (float)(S1[0] + S2[0]);
 		 
 		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
 		
@@ -51,13 +51,9 @@ EstOutput SorEst::getValues(vector<SharedRAbundVector*> shared) {
 		return data;
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the SorEst class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "SorEst", "getValues");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the SorEst class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }
 
 /***********************************************************************/