X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedsobs.cpp;h=f9b5eddcd919acdd409c9b0792294034dbcb7391;hp=b65a8781db509ab48c77ea20f0341c47e2ad1d62;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2

diff --git a/sharedsobs.cpp b/sharedsobs.cpp
index b65a878..f9b5edd 100644
--- a/sharedsobs.cpp
+++ b/sharedsobs.cpp
@@ -16,10 +16,10 @@
 EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
 	try {
 		data.resize(1,0);
-		int observed = 0;
+		double observed = 0;
 
 		//loop through the species in each group
-		for (int k = 0; k < shared[0]->size(); k++) {
+		for (int k = 0; k < shared[0]->getNumBins(); k++) {
 			//if you have found a new species
 			if (shared[0]->getAbundance(k) != 0) { observed++; } 
 			else if ((shared[0]->getAbundance(k) == 0) && (shared[1]->getAbundance(k) != 0)) { observed++; }
@@ -29,7 +29,7 @@ EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
 		return data;
 	}
 	catch(exception& e) {
-		errorOut(e, "SharedSobs", "getValues");
+		m->errorOut(e, "SharedSobs", "getValues");
 		exit(1);
 	}
 }