X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedrabundvector.h;h=664718518e276c7c84984f5c1fe76c9b3bf46523;hp=beece8e14a1082d7347a62fdc0e95ebcd24a9cc2;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=37eac2026d91179acda0494c4dcca22f176551b9

diff --git a/sharedrabundvector.h b/sharedrabundvector.h
index beece8e..6647185 100644
--- a/sharedrabundvector.h
+++ b/sharedrabundvector.h
@@ -15,15 +15,15 @@
 #include "sharedsabundvector.h"
 #include "sharedrabundfloatvector.h"
 #include "rabundvector.hpp"
-#include "groupmap.h"
+//#include "groupmap.h"
 
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
+/*  DataStructure for a shared file.
+	This class is a child to datavector.  It represents OTU information at a certain distance. 
 	It is similiar to an rabundvector except each member of data knows which group it belongs to.
 	Each member of the internal container "data" is a struct of type individual. 
 	An individual which knows the OTU from which it came, 
 	the group it is in and its abundance.  */
 
-class GlobalData;
 
 class SharedRAbundVector : public DataVector {
 	
@@ -40,6 +40,8 @@ public:
 	int getMaxRank();
 	string getGroup();
 	void setGroup(string);
+	string getBinLabel();
+	void setBinLabel(string);
 	int getGroupIndex();
 	void setGroupIndex(int);								
 
@@ -48,6 +50,7 @@ public:
 	individual get(int);
 	vector <individual> getData();
 	int getAbundance(int);
+    vector<int> getAbundances();
 	int numNZ();
 	void sortD();  //Sorts the data in descending order.
 	void push_front(int, int, string); //abundance, otu, groupname
@@ -61,6 +64,7 @@ public:
 	vector<individual>::reverse_iterator rend();
 	
 	void print(ostream&);
+	void printHeaders(ostream&);
 		
 	RAbundVector getRAbundVector();
 	RAbundVector getRAbundVector2();
@@ -75,8 +79,8 @@ public:
 private:
 	vector<individual>  data; 
 	vector<SharedRAbundVector*> lookup;
-	GlobalData* globaldata;
-	GroupMap* groupmap;
+	//GlobalData* globaldata;
+	//GroupMap* groupmap;
 	int maxRank;
 	int numBins;
 	int numSeqs;