X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedjclass.cpp;h=ed21335eddc1ab2360d74b761ea9eff842c6791a;hp=ede4e31264d49b1cc26ccb4e684262ec6f1c1d3e;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=e4c80376cc4533f66c8dfc18f3e1a86a60ac17fe

diff --git a/sharedjclass.cpp b/sharedjclass.cpp
index ede4e31..ed21335 100644
--- a/sharedjclass.cpp
+++ b/sharedjclass.cpp
@@ -21,7 +21,7 @@ EstOutput Jclass::getValues(vector<SharedRAbundVector*> shared) {
 
 		data.resize(1,0);
 		
-		for (int i = 0; i < shared[0]->size(); i++) {
+		for (int i = 0; i < shared[0]->getNumBins(); i++) {
 			//store in temps to avoid multiple repetitive function calls
 			tempA = shared[0]->getAbundance(i);
 			tempB = shared[1]->getAbundance(i);
@@ -34,7 +34,7 @@ EstOutput Jclass::getValues(vector<SharedRAbundVector*> shared) {
 			if ((tempA != 0) && (tempB != 0)) {	S12++; }
 		}
 		
-		data[0] = S12 / (float)(S1 + S2 - S12);
+		data[0] = 1.0 - S12 / (float)(S1 + S2 - S12);
 		
 		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }