X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedcommand.h;h=a916c854280c74d035968bfc84ec4ab88a4f70e6;hp=9d9c194dbbaab4ff7a079058c1c43421937659fe;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=f687723a8357916e86a05116978e6869b039ce36

diff --git a/sharedcommand.h b/sharedcommand.h
index 9d9c194..a916c85 100644
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -30,8 +30,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "make.shared";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Make.shared"; }
 	string getDescription()		{ return "make a shared file from a list and group file"; }
 
@@ -44,8 +45,8 @@ private:
 	bool isValidGroup(string, vector<string>);
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	int ListGroupSameSeqs(vector<string>&, SharedListVector*);
-    int createSharedFromListGroup(string);
-    int createSharedFromBiom(string);
+    int createSharedFromListGroup();
+    int createSharedFromBiom();
     string getTag(string&);
     vector<string> readRows(string, int&); 
     int getDims(string, int&, int&);