X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sffinfocommand.h;h=12f0180db565edf8818455648eadcc19107ec5ab;hp=1909e2d43e6d83b3d48ef06922b2d369a0e104d5;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=3e8b80da722e11c72bce957e2f42a6e884dd02b6

diff --git a/sffinfocommand.h b/sffinfocommand.h
index 1909e2d..12f0180 100644
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -13,50 +13,6 @@
 #include "command.hpp"
 #include "groupmap.h"
 
-/**********************************************************/
-struct CommonHeader {
-	unsigned int magicNumber;
-	string version;
-	unsigned long long indexOffset;
-	unsigned int indexLength;
-	unsigned int numReads;
-	unsigned short headerLength;
-	unsigned short keyLength;
-	unsigned short numFlowsPerRead;
-	int flogramFormatCode;
-	string flowChars; //length depends on number flow reads
-	string keySequence; //length depends on key length
-	
-	CommonHeader(){ magicNumber=0; indexOffset=0; indexLength=0; numReads=0; headerLength=0; keyLength=0; numFlowsPerRead=0; flogramFormatCode='s'; } 
-	~CommonHeader() { }
-};
-/**********************************************************/
-struct Header {
-	unsigned short headerLength;
-	unsigned short nameLength;
-	unsigned int numBases;
-	unsigned short clipQualLeft;
-	unsigned short clipQualRight;
-	unsigned short clipAdapterLeft;
-	unsigned short clipAdapterRight;
-	string name; //length depends on nameLength
-	string timestamp;
-	string region;
-	string xy;
-	
-	Header() { headerLength=0; nameLength=0; numBases=0; clipQualLeft=0; clipQualRight=0; clipAdapterLeft=0; clipAdapterRight=0; }
-	~Header() { } 
-};
-/**********************************************************/
-struct seqRead {
-	vector<unsigned short> flowgram;
-	vector<unsigned int> flowIndex;
-	string bases;
-	vector<unsigned int> qualScores;
-	
-	seqRead() { } 
-	~seqRead() { } 
-};
 /**********************************************************/
 
 class SffInfoCommand : public Command {