X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=setdircommand.h;h=36753edeb57f8601dd0a1f5309b9c1cf67109429;hp=837a8b58053cc7b2f5491d8fb59ba00c7c758328;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/setdircommand.h b/setdircommand.h
index 837a8b5..36753ed 100644
--- a/setdircommand.h
+++ b/setdircommand.h
@@ -25,8 +25,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "set.dir";		}
 	string getCommandCategory()		{ return "General";		}
-	string getOutputFileNameTag(string, string) { return ""; }
+	
 	string getHelpString();	
+    string getOutputPattern(string){ return ""; }	
 	string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
 	string getDescription()		{ return "set input, output and default directories"; }
 
@@ -36,7 +37,7 @@ public:
 private:
 	CommandFactory* commandFactory;
 	string output, input, tempdefault;
-	bool abort, debugOnly;
+	bool abort, debugOnly, modifyNames;
 	vector<string> outputNames;