X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sequencedb.h;h=8f7640ed3f90f1feb827448120759911d2da8e21;hp=88b31e2e5d7adc050c58e3d18cb7ffca7652370b;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=faf4e99552d6fb4595ff348b1f909ddc74536da2

diff --git a/sequencedb.h b/sequencedb.h
index 88b31e2..8f7640e 100644
--- a/sequencedb.h
+++ b/sequencedb.h
@@ -30,18 +30,22 @@ public:
 	int getNumSeqs();
 	
 	void set(int, string);     //unaligned - should also set length
-	void set(int, Sequence*);   //unaligned - should also set length
-	Sequence* get(int);         //returns sequence name at that location
-	void push_back(Sequence*);        //adds unaligned sequence
+	void set(int, Sequence);   //unaligned - should also set length
+	Sequence get(int);         //returns sequence name at that location
+	void push_back(Sequence);        //adds unaligned sequence
 	void resize(int);      //resizes data
 	void clear();              //clears data - remeber to loop through and delete the sequences inside or you will have a memory leak
 	int size();                //returns datas size
 	void print(ostream&);      //loops through data using sequence class print
+	bool sameLength() { return samelength; }
 		
 private:
-	vector<Sequence*> data;
+	vector<Sequence> data;
 	string readName(ifstream&);
 	string readSequence(ifstream&);
+	MothurOut* m;
+	bool samelength;
+	int length;
 
 };