X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sequencedb.h;fp=sequencedb.h;h=f31fc320c698de446cae90f6eb11e4c83bf96eb9;hp=0000000000000000000000000000000000000000;hb=c196b6b4768ccb84955d773ff0f22e4994d1ba7b;hpb=dc08123b7f14e2305e5bb2b3a8fcef96fc829b07

diff --git a/sequencedb.h b/sequencedb.h
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+#ifndef SEQUENCEDB_H
+#define SEQUENCEDB_H
+
+/*
+ *  sequencedb.h
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 4/13/09.
+ *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *
+ */
+
+
+using namespace std;
+
+#include "sequence.hpp"
+#include "calculator.h"
+
+
+
+
+class SequenceDB {
+	
+public:
+	SequenceDB();
+	SequenceDB(int);           //makes data that size
+	SequenceDB(ifstream&);	   //reads file to fill data
+//	~SequenceDB();             //loops through data and delete each sequence
+
+	int getNumSeqs();
+	
+	void set(int, string);     //unaligned - should also set length
+	void set(int, Sequence);   //unaligned - should also set length
+	Sequence get(int);         //returns sequence name at that location
+	void add(Sequence);        //adds unaligned sequence
+	void changeSize(int);      //resizes data
+	void clear();              //clears data - remeber to loop through and delete the sequences inside or you will have a memory leak
+	int size();                //returns datas size
+	void print(ostream&);      //loops through data using sequence class print
+		
+private:
+	vector<Sequence> data;
+
+};
+
+#endif